miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00640;MIR167_1;EU532400.1/147-239 3634:Gossypium barbadense
(sea-island cotton)
Length = 93
Score = 141 bits (71), Expect = 2e-33
Identities = 84/87 (96%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 15 agcagttgaagctgccagcatgatctaaacttccttctctgtcgagaggatagattggat 74
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||
Sbjct: 8 agcagttgaagctgccagcatgatctaaacttccttctctgttgag-ggatagatgggat 66
Query: 75 catgtggtagcttcacctgttgttggg 101
|||||||||||||||||||||||||||
Sbjct: 67 catgtggtagcttcacctgttgttggg 93
>RF00640;MIR167_1;ABIM01012099.1/6617-6710 3649:Carica papaya
(papaya)
Length = 94
Score = 77.8 bits (39), Expect = 3e-14
Identities = 74/83 (89%), Gaps = 2/83 (2%)
Strand = Plus / Plus
Query: 14 tagcagttgaagctgccagcatgatctaaac-ttccttctctgtcgagaggatagattgg 72
||||||||||||||||||||||||||||||| ||||||| | || ||||| ||| ||
Sbjct: 7 tagcagttgaagctgccagcatgatctaaactttccttc-cactctcaaggattgatcgg 65
Query: 73 atcatgtggtagcttcacctgtt 95
|||||||||||||||||||||||
Sbjct: 66 atcatgtggtagcttcacctgtt 88
>RF00640;MIR167_1;AC225328.1/13792-13888 4081:Solanum lycopersicum
Length = 97
Score = 73.8 bits (37), Expect = 4e-13
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 10 ccactagcagttgaagctgccagcatgatctaaactt 46
|||||||||||||||||||||||||||||||||||||
Sbjct: 3 ccactagcagttgaagctgccagcatgatctaaactt 39
>RF00640;MIR167_1;AC209507.1/126147-126250 4081:Solanum
lycopersicum
Length = 104
Score = 71.9 bits (36), Expect = 2e-12
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 11 cactagcagttgaagctgccagcatgatctaaactt 46
||||||||||||||||||||||||||||||||||||
Sbjct: 4 cactagcagttgaagctgccagcatgatctaaactt 39
>RF00640;MIR167_1;CAAP02000793.1/41456-41548 29760:Vitis vinifera
Length = 93
Score = 69.9 bits (35), Expect = 7e-12
Identities = 78/91 (85%), Gaps = 1/91 (1%)
Strand = Plus / Plus
Query: 10 ccactagcagttgaagctgccagcatgatctaaacttccttctctgtcgagaggatagat 69
|||||| |||||||||||||||||||||||||||||| |||| || | | || | ||||
Sbjct: 3 ccactatcagttgaagctgccagcatgatctaaacttgcttccct-ttgtgaacagagat 61
Query: 70 tggatcatgtggtagcttcacctgttgttgg 100
|||||||||| || |||||||||||||||
Sbjct: 62 cagatcatgtggcagtttcacctgttgttgg 92
>RF00640;MIR167_1;AARH01002853.1/45908-46003 3694:Populus
trichocarpa
Length = 96
Score = 67.9 bits (34), Expect = 3e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 10 ccactagcagttgaagctgccagcatgatctaaa 43
||||||||||||||||||||||||||||||||||
Sbjct: 3 ccactagcagttgaagctgccagcatgatctaaa 36
>RF00640;MIR167_1;AARH01001059.1/157614-157519 3694:Populus
trichocarpa
Length = 96
Score = 65.9 bits (33), Expect = 1e-10
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 10 ccactagcagttgaagctgccagcatgatctaa 42
|||||||||||||||||||||||||||||||||
Sbjct: 3 ccactagcagttgaagctgccagcatgatctaa 35
>RF00640;MIR167_1;AASG02013390.1/4624-4525 3988:Ricinus communis
(castor bean)
Length = 100
Score = 65.9 bits (33), Expect = 1e-10
Identities = 79/93 (84%), Gaps = 6/93 (6%)
Strand = Plus / Plus
Query: 10 ccactagcagttgaagctgccagcatgatctaaact-tccttctctgtcgaga-----gg 63
|||||||||||| ||||||||||||||||||||| | || ||||| || | | ||
Sbjct: 3 ccactagcagttaaagctgccagcatgatctaaattctctttctccatcaaaatagaagg 62
Query: 64 atagattggatcatgtggtagcttcacctgttg 96
||||||| |||||||||||||||||||||||||
Sbjct: 63 atagattagatcatgtggtagcttcacctgttg 95
>RF00640;MIR167_1;BABK01022869.1/1081-990 34305:Lotus japonicus
Length = 92
Score = 61.9 bits (31), Expect = 2e-09
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 10 ccactagcagttgaagctgccagcatgatctaaacttcc 48
|||||| |||||||||||||||||||||||| |||||||
Sbjct: 3 ccactaccagttgaagctgccagcatgatcttaacttcc 41
>RF00640;MIR167_1;CAAP02000379.1/24621-24714 29760:Vitis vinifera
Length = 94
Score = 61.9 bits (31), Expect = 2e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 14 tagcagttgaagctgccagcatgatctaaacttcc 48
||||||||||||||||||||||||||| |||||||
Sbjct: 7 tagcagttgaagctgccagcatgatctcaacttcc 41
>RF00640;MIR167_1;AASG02005785.1/15088-15180 3988:Ricinus communis
(castor bean)
Length = 93
Score = 60.0 bits (30), Expect = 6e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 10 ccactagcagttgaagctgccagcatgatctaaa 43
|||||| |||||||||||||||||||||||||||
Sbjct: 3 ccactatcagttgaagctgccagcatgatctaaa 36
>RF00640;MIR167_1;AARH01008931.1/3492-3395 3694:Populus
trichocarpa
Length = 98
Score = 58.0 bits (29), Expect = 3e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 10 ccactagcagttgaagctgccagcatgatctaaactt 46
||||||| ||||||||||||||||||||||| |||||
Sbjct: 3 ccactagtagttgaagctgccagcatgatctgaactt 39
>RF00640;MIR167_1;CAAP02001791.1/44208-44309 29760:Vitis vinifera
Length = 102
Score = 58.0 bits (29), Expect = 3e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 14 tagcagttgaagctgccagcatgatctaa 42
|||||||||||||||||||||||||||||
Sbjct: 7 tagcagttgaagctgccagcatgatctaa 35
>RF00640;MIR167_1;ABIM01018604.1/478-580 3649:Carica papaya
(papaya)
Length = 103
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 14 tagcagttgaagctgccagcatgatct 40
|||||||||||||||||||||||||||
Sbjct: 7 tagcagttgaagctgccagcatgatct 33
>RF00640;MIR167_1;AC225328.1/5014-5119 4081:Solanum lycopersicum
Length = 106
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 21 tgaagctgccagcatgatctaaactt 46
||||||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctaaactt 39
>RF00640;MIR167_1;AARH01004314.1/38692-38599 3694:Populus
trichocarpa
Length = 94
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 17 cagttgaagctgccagcatgatct 40
||||||||||||||||||||||||
Sbjct: 10 cagttgaagctgccagcatgatct 33
>RF00640;MIR167_1;AASG02001065.1/6152-6064 3988:Ricinus communis
(castor bean)
Length = 89
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 18 agttgaagctgccagcatgatct 40
|||||||||||||||||||||||
Sbjct: 11 agttgaagctgccagcatgatct 33
>RF00640;MIR167_1;EU548950.1/213-338 3702:Arabidopsis thaliana
(thale cress)
Length = 126
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 tgaagctgccagcatgatctaa 42
||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctaa 35
>RF00640;MIR167_1;AARH01012195.1/26948-26514 3694:Populus
trichocarpa
Length = 435
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 gttgaagctgccagcatgatct 40
||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatct 33
>RF00640;MIR167_1;AC212802.1/77650-78085 3694:Populus trichocarpa
Length = 436
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 gttgaagctgccagcatgatct 40
||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatct 33
>RF00640;MIR167_1;BABK01002345.1/2496-2649 34305:Lotus japonicus
Length = 154
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 gttgaagctgccagcatgatct 40
||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatct 33
>RF00640;MIR167_1;CAAP02000801.1/49293-49646 29760:Vitis vinifera
Length = 354
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 gttgaagctgccagcatgatct 40
||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatct 33
>RF00640;MIR167_1;ABXC01002438.1/140052-139788 4558:Sorghum
bicolor (sorghum)
Length = 265
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 gttgaagctgccagcatgatct 40
||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatct 33
>RF00640;MIR167_1;ABXC01002259.1/3174-3066 4558:Sorghum bicolor
(sorghum)
Length = 109
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 15 agcagttgaagctgccagcatgatct 40
||||| ||||||||||||||||||||
Sbjct: 8 agcagctgaagctgccagcatgatct 33
>RF00640;MIR167_1;ABXC01000087.1/205849-206071 4558:Sorghum
bicolor (sorghum)
Length = 223
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 tgaagctgccagcatgatctaa 42
||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctaa 35
>RF00640;MIR167_1;ABXC01006864.1/41201-41318 4558:Sorghum bicolor
(sorghum)
Length = 118
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 gttgaagctgccagcatgatct 40
||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatct 33
>RF00640;MIR167_1;AC210447.1/128234-128320 4538:Oryza glaberrima
(African rice)
Length = 87
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 15 agcagttgaagctgccagcatgatct 40
||||| ||||||||||||||||||||
Sbjct: 8 agcaggtgaagctgccagcatgatct 33
>RF00640;MIR167_1;AAAA02011018.1/78132-77981 39946:Oryza sativa
Indica Group
Length = 152
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 tgaagctgccagcatgatctaa 42
||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctaa 35
>RF00640;MIR167_1;AAAA02003942.1/33918-33790 39946:Oryza sativa
Indica Group
Length = 129
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 15 agcagttgaagctgccagcatgatct 40
||||| ||||||||||||||||||||
Sbjct: 8 agcagctgaagctgccagcatgatct 33
