miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00640;MIR167_1;AASG02000565.1/57130-57272 3988:Ricinus communis
(castor bean)
Length = 143
Score = 91.7 bits (46), Expect = 2e-18
Identities = 46/46 (100%)
Strand = Plus / Plus
Query: 81 tgctaaccctagctaggtcatgctctgacagcctcactccttccta 126
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 tgctaaccctagctaggtcatgctctgacagcctcactccttccta 141
Score = 71.9 bits (36), Expect = 2e-12
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 13 ggaaaaagtgaagctgccagcatgatctatctttggttagtgag 56
|||||| |||||||||||||||||||||| ||||||||||||||
Sbjct: 6 ggaaaaggtgaagctgccagcatgatctagctttggttagtgag 49
>RF00640;MIR167_1;AARH01033933.1/298-187 3694:Populus trichocarpa
Length = 112
Score = 87.7 bits (44), Expect = 4e-17
Identities = 44/44 (100%)
Strand = Plus / Plus
Query: 83 ctaaccctagctaggtcatgctctgacagcctcactccttccta 126
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67 ctaaccctagctaggtcatgctctgacagcctcactccttccta 110
Score = 71.9 bits (36), Expect = 2e-12
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 13 ggaaaaagtgaagctgccagcatgatctatctttggttag 52
|||||| |||||||||||||||||||||||||||||||||
Sbjct: 6 ggaaaaggtgaagctgccagcatgatctatctttggttag 45
>RF00640;MIR167_1;AARH01001059.1/160212-160110 3694:Populus
trichocarpa
Length = 103
Score = 79.8 bits (40), Expect = 9e-15
Identities = 40/40 (100%)
Strand = Plus / Plus
Query: 13 ggaaaaagtgaagctgccagcatgatctatctttggttag 52
||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 ggaaaaagtgaagctgccagcatgatctatctttggttag 45
Score = 79.8 bits (40), Expect = 9e-15
Identities = 43/44 (97%)
Strand = Plus / Plus
Query: 83 ctaaccctagctaggtcatgctctgacagcctcactccttccta 126
|||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 58 ctaaccctagctaggtcatgctgtgacagcctcactccttccta 101
>RF00640;MIR167_1;CAAP02000379.1/19428-19545 29760:Vitis vinifera
Length = 118
Score = 79.8 bits (40), Expect = 9e-15
Identities = 43/44 (97%)
Strand = Plus / Plus
Query: 82 gctaaccctagctaggtcatgctctgacagcctcactccttcct 125
|||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 72 gctaaccctagctaggtcatgccctgacagcctcactccttcct 115
Score = 56.0 bits (28), Expect = 1e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 13 ggaaaaagtgaagctgccagcatgatctatctttgg 48
|||| |||||||||||||||||||||||| ||||||
Sbjct: 6 ggaataagtgaagctgccagcatgatctagctttgg 41
>RF00640;MIR167_1;ABIM01012099.1/4885-4992 3649:Carica papaya
(papaya)
Length = 108
Score = 75.8 bits (38), Expect = 1e-13
Identities = 41/42 (97%)
Strand = Plus / Plus
Query: 84 taaccctagctaggtcatgctctgacagcctcactccttcct 125
||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 64 taaccctagttaggtcatgctctgacagcctcactccttcct 105
Score = 58.0 bits (29), Expect = 3e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 13 ggaaaaagtgaagctgccagcatgatcta 41
|||||||||||||||||||||||||||||
Sbjct: 6 ggaaaaagtgaagctgccagcatgatcta 34
>RF00640;MIR167_1;EU548982.1/151-266 3702:Arabidopsis thaliana
(thale cress)
Length = 116
Score = 73.8 bits (37), Expect = 5e-13
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 85 aaccctagctaggtcatgctctgacagcctcactccttcct 125
||||| |||||||||||||||||||||||||||||||||||
Sbjct: 73 aacccaagctaggtcatgctctgacagcctcactccttcct 113
Score = 69.9 bits (35), Expect = 9e-12
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 13 ggaaaaagtgaagctgccagcatgatctatctttggtta 51
|||| ||||||||||||||||||||||||||||||||||
Sbjct: 6 ggaacaagtgaagctgccagcatgatctatctttggtta 44
>RF00640;MIR167_1;AP006429.1/12775-12654 34305:Lotus japonicus
Length = 122
Score = 71.9 bits (36), Expect = 2e-12
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 13 ggaaaaagtgaagctgccagcatgatctatctttggttag 52
||||||||||||||||||||||||||||| ||||||||||
Sbjct: 6 ggaaaaagtgaagctgccagcatgatctagctttggttag 45
>RF00640;MIR167_1;AC174291.12/5719-6052 3880:Medicago truncatula
(barrel medic)
Length = 334
Score = 61.9 bits (31), Expect = 2e-09
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 13 ggaaaaagtgaagctgccagcatgatctatctttggtta 51
||||||||||||||||||||||||||||| ||||||||
Sbjct: 6 ggaaaaagtgaagctgccagcatgatctaggtttggtta 44
Score = 46.1 bits (23), Expect = 1e-04
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 84 taaccctagctaggtcatgctctgacagcctcactccttccta 126
||||||| |||||||||||| || |||||||||||||||||
Sbjct: 290 taaccctgactaggtcatgctgtgctagcctcactccttccta 332
>RF00640;MIR167_1;EU084500.1/298-436 260130:Acca sellowiana
Length = 139
Score = 58.0 bits (29), Expect = 3e-08
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 84 taaccctagctaggtcatgctctgacagcctcactccttcc 124
||||||||||||||||||||| |||||||||||| |||||
Sbjct: 95 taaccctagctaggtcatgctgcgacagcctcacttcttcc 135
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 19 agtgaagctgccagcatgatcta 41
|||||||||||||||||||||||
Sbjct: 12 agtgaagctgccagcatgatcta 34
>RF00640;MIR167_1;AC225328.1/5014-5119 4081:Solanum lycopersicum
Length = 106
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 10 agtggaaaaagtgaagctgccagcatgatcta 41
||||||| ||||||||||||||||||||||||
Sbjct: 3 agtggaacaagtgaagctgccagcatgatcta 34
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 94 taggtcatgctctgacagcctcactccttcct 125
|||||||||||| |||||||||||||||||||
Sbjct: 72 taggtcatgctcggacagcctcactccttcct 103
>RF00640;MIR167_1;ABXC01005647.1/66563-66713 4558:Sorghum bicolor
(sorghum)
Length = 151
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 19 agtgaagctgccagcatgatctatctttggtt 50
||||||||||||||||||||||| ||||||||
Sbjct: 12 agtgaagctgccagcatgatctagctttggtt 43
>RF00640;MIR167_1;ABXC01000087.1/205849-206071 4558:Sorghum
bicolor (sorghum)
Length = 223
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 14 gaaaaagtgaagctgccagcatgatcta 41
|||| |||||||||||||||||||||||
Sbjct: 7 gaaagagtgaagctgccagcatgatcta 34
>RF00640;MIR167_1;EU947925.1/384-504 4577:Zea mays
Length = 121
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 19 agtgaagctgccagcatgatcta 41
|||||||||||||||||||||||
Sbjct: 12 agtgaagctgccagcatgatcta 34
>RF00640;MIR167_1;ABXC01000050.1/9782-9902 4558:Sorghum bicolor
(sorghum)
Length = 121
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 19 agtgaagctgccagcatgatcta 41
|||||||||||||||||||||||
Sbjct: 12 agtgaagctgccagcatgatcta 34
>RF00640;MIR167_1;AL928781.4/79791-79930 4530:Oryza sativa (rice)
Length = 140
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 19 agtgaagctgccagcatgatcta 41
|||||||||||||||||||||||
Sbjct: 12 agtgaagctgccagcatgatcta 34
>RF00640;MIR167_1;AC092076.7/52843-52692 39947:Oryza sativa
Japonica Group
Length = 152
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 19 agtgaagctgccagcatgatcta 41
|||||||||||||||||||||||
Sbjct: 12 agtgaagctgccagcatgatcta 34
>RF00640;MIR167_1;AAAA02011018.1/78132-77981 39946:Oryza sativa
Indica Group
Length = 152
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 20 gtgaagctgccagcatgatcta 41
||||||||||||||||||||||
Sbjct: 13 gtgaagctgccagcatgatcta 34
