miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00640;MIR167_1;AARH01002853.1/45908-46003 3694:Populus
trichocarpa
Length = 96
Score = 69.9 bits (35), Expect = 7e-12
Identities = 69/79 (87%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 17 cagttgaagctgccagcatgatcttaattttccttctt-tttatcaaggaaagatcagat 75
|||||||||||||||||||||||| |||| ||| ||| ||||||||||| ||| ||||
Sbjct: 10 cagttgaagctgccagcatgatctaaattaacctccttctttatcaaggatggattagat 69
Query: 76 catatggcagtttcacctg 94
||| ||| |||||||||||
Sbjct: 70 catgtggtagtttcacctg 88
>RF00640;MIR167_1;AARH01004314.1/38692-38599 3694:Populus
trichocarpa
Length = 94
Score = 58.0 bits (29), Expect = 3e-08
Identities = 72/84 (85%), Gaps = 3/84 (3%)
Strand = Plus / Plus
Query: 15 atcagttgaagctgccagcatgatcttaattttccttctttttatcaaggaaag-atcag 73
|||||||||||||||||||||||||||| ||||| | ||| | ||||||| | |||
Sbjct: 8 atcagttgaagctgccagcatgatcttagccttcctcc--tttgttgaggaaagaaacag 65
Query: 74 atcatatggcagtttcacctgttg 97
||||| ||||||||||||||||||
Sbjct: 66 atcatgtggcagtttcacctgttg 89
>RF00640;MIR167_1;AASG02005785.1/15088-15180 3988:Ricinus communis
(castor bean)
Length = 93
Score = 58.0 bits (29), Expect = 3e-08
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 10 ccaccatcagttgaagctgccagcatgatcttaattttcct 50
|||| |||||||||||||||||||||||||| ||| |||||
Sbjct: 3 ccactatcagttgaagctgccagcatgatctaaatcttcct 43
>RF00640;MIR167_1;ABIM01011014.1/4156-4251 3649:Carica papaya
(papaya)
Length = 96
Score = 56.0 bits (28), Expect = 1e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 8 ctccaccatcagttgaagctgccagcatgatcttaa 43
|||| ||||||| |||||||||||||||||||||||
Sbjct: 1 ctccgccatcagatgaagctgccagcatgatcttaa 36
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 66 aagatcagatcatatggcagtttcacctgttg 97
||||||||||||||||||||||||||| ||||
Sbjct: 60 aagatcagatcatatggcagtttcacccgttg 91
>RF00640;MIR167_1;ABIM01012099.1/6617-6710 3649:Carica papaya
(papaya)
Length = 94
Score = 56.0 bits (28), Expect = 1e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 17 cagttgaagctgccagcatgatcttaattttccttc 52
|||||||||||||||||||||||| || ||||||||
Sbjct: 10 cagttgaagctgccagcatgatctaaactttccttc 45
>RF00640;MIR167_1;CAAP02000793.1/41456-41548 29760:Vitis vinifera
Length = 93
Score = 56.0 bits (28), Expect = 1e-07
Identities = 75/88 (85%), Gaps = 2/88 (2%)
Strand = Plus / Plus
Query: 10 ccaccatcagttgaagctgccagcatgatcttaattttccttctttttatcaaggaaaga 69
|||| ||||||||||||||||||||||||| ||| || |||| ||| | || | |||
Sbjct: 3 ccactatcagttgaagctgccagcatgatc-taaacttgcttccctttgtgaa-cagaga 60
Query: 70 tcagatcatatggcagtttcacctgttg 97
||||||||| ||||||||||||||||||
Sbjct: 61 tcagatcatgtggcagtttcacctgttg 88
>RF00640;MIR167_1;BABK01022869.1/1081-990 34305:Lotus japonicus
Length = 92
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 17 cagttgaagctgccagcatgatcttaa 43
|||||||||||||||||||||||||||
Sbjct: 10 cagttgaagctgccagcatgatcttaa 36
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 63 ggaaagatcagatcatatggcagtttcacct 93
|||||||||||||||| ||||||||||||||
Sbjct: 53 ggaaagatcagatcatgtggcagtttcacct 83
>RF00640;MIR167_1;AC209507.1/126147-126250 4081:Solanum
lycopersicum
Length = 104
Score = 54.0 bits (27), Expect = 4e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 17 cagttgaagctgccagcatgatcttaattttcctt 51
|||||||||||||||||||||||| || |||||||
Sbjct: 10 cagttgaagctgccagcatgatctaaactttcctt 44
>RF00640;MIR167_1;AARH01008931.1/3492-3395 3694:Populus
trichocarpa
Length = 98
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 18 agttgaagctgccagcatgatcttaattttcctt 51
||||||||||||||||||||||| || |||||||
Sbjct: 11 agttgaagctgccagcatgatctgaactttcctt 44
>RF00640;MIR167_1;EU532400.1/147-239 3634:Gossypium barbadense
(sea-island cotton)
Length = 93
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 17 cagttgaagctgccagcatgatct 40
||||||||||||||||||||||||
Sbjct: 10 cagttgaagctgccagcatgatct 33
>RF00640;MIR167_1;ABIM01018604.1/478-580 3649:Carica papaya
(papaya)
Length = 103
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 17 cagttgaagctgccagcatgatct 40
||||||||||||||||||||||||
Sbjct: 10 cagttgaagctgccagcatgatct 33
>RF00640;MIR167_1;AARH01001059.1/157614-157519 3694:Populus
trichocarpa
Length = 96
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 17 cagttgaagctgccagcatgatct 40
||||||||||||||||||||||||
Sbjct: 10 cagttgaagctgccagcatgatct 33
>RF00640;MIR167_1;AC225328.1/13792-13888 4081:Solanum lycopersicum
Length = 97
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 17 cagttgaagctgccagcatgatct 40
||||||||||||||||||||||||
Sbjct: 10 cagttgaagctgccagcatgatct 33
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 62 aggaaagatcagatcatatggcagtttcacctgttg 97
||||||||||||||||| |||||| ||||||||||
Sbjct: 57 aggaaagatcagatcatgtggcagcatcacctgttg 92
>RF00640;MIR167_1;CAAP02000379.1/24621-24714 29760:Vitis vinifera
Length = 94
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 17 cagttgaagctgccagcatgatct 40
||||||||||||||||||||||||
Sbjct: 10 cagttgaagctgccagcatgatct 33
Score = 46.1 bits (23), Expect = 1e-04
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 59 tcaaggaaagatcagatcatatggcagtttcacctgttg 97
|||||||||||||||||||| ||| || ||||||||||
Sbjct: 51 tcaaggaaagatcagatcatgtggtagcctcacctgttg 89
>RF00640;MIR167_1;CAAP02001791.1/44208-44309 29760:Vitis vinifera
Length = 102
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 17 cagttgaagctgccagcatgatct 40
||||||||||||||||||||||||
Sbjct: 10 cagttgaagctgccagcatgatct 33
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 62 aggaaagatcagatcatatggcagtttcacctgttg 97
|||||||| ||||||| ||||||||||||||||||
Sbjct: 62 aggaaagactagatcatgtggcagtttcacctgttg 97
>RF00640;MIR167_1;AASG02001065.1/6152-6064 3988:Ricinus communis
(castor bean)
Length = 89
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 18 agttgaagctgccagcatgatct 40
|||||||||||||||||||||||
Sbjct: 11 agttgaagctgccagcatgatct 33
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 72 agatcatatggcagtttcacctgttg 97
||||||| ||||||||||||||||||
Sbjct: 59 agatcatgtggcagtttcacctgttg 84
>RF00640;MIR167_1;AARH01012195.1/26948-26514 3694:Populus
trichocarpa
Length = 435
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 gttgaagctgccagcatgatct 40
||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatct 33
>RF00640;MIR167_1;AC212802.1/77650-78085 3694:Populus trichocarpa
Length = 436
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 gttgaagctgccagcatgatct 40
||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatct 33
>RF00640;MIR167_1;BABK01002345.1/2496-2649 34305:Lotus japonicus
Length = 154
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 gttgaagctgccagcatgatct 40
||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatct 33
>RF00640;MIR167_1;CAAP02000801.1/49293-49646 29760:Vitis vinifera
Length = 354
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 gttgaagctgccagcatgatct 40
||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatct 33
>RF00640;MIR167_1;ABXC01002438.1/140052-139788 4558:Sorghum
bicolor (sorghum)
Length = 265
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 gttgaagctgccagcatgatct 40
||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatct 33
>RF00640;MIR167_1;ABXC01006864.1/41201-41318 4558:Sorghum bicolor
(sorghum)
Length = 118
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 gttgaagctgccagcatgatct 40
||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatct 33
