miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00865;MIR169_5;ABIM01001939.1/16104-16248 3649:Carica papaya
(papaya)
Length = 145
Score = 65.9 bits (33), Expect = 1e-10
Identities = 39/41 (95%)
Strand = Plus / Minus
Query: 1 gataaagagtctttgtttggtagccagggatgacttgccta 41
||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 144 gataaagagtcattgtttggtagccaaggatgacttgccta 104
>RF00865;MIR169_5;AARH01000583.1/30070-29928 3694:Populus
trichocarpa
Length = 143
Score = 52.0 bits (26), Expect = 2e-06
Identities = 36/38 (94%), Gaps = 1/38 (2%)
Strand = Plus / Minus
Query: 3 taaagagtctttgtttggtagccagggatgacttgcct 40
||||||||||| |||||||||||| |||||||||||||
Sbjct: 141 taaagagtctt-gtttggtagccaaggatgacttgcct 105
>RF00645;MIR169_2;ABIM01001939.1/16240-16110 3649:Carica papaya
(papaya)
Length = 131
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 8 agtctttgtttggtagccagggatgacttgccta 41
|||| |||||||||||||| ||||||||||||||
Sbjct: 1 agtcattgtttggtagccaaggatgacttgccta 34
>RF00645;MIR169_2;ABIM01014270.1/4373-4157 3649:Carica papaya
(papaya)
Length = 217
Score = 50.1 bits (25), Expect = 8e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 8 agtctttgtttggtagccagggatgacttgcct 40
||||||||| ||||||||| |||||||||||||
Sbjct: 1 agtctttgtctggtagccaaggatgacttgcct 33
>RF00865;MIR169_5;AC216452.1/111365-111227 3694:Populus trichocarpa
Length = 139
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 13 ttgtttggtagccagggatgacttgcct 40
|||||||||||||| |||||||||||||
Sbjct: 128 ttgtttggtagccaaggatgacttgcct 101
>RF00865;MIR169_5;AASG02002697.1/24175-24333 3988:Ricinus communis
(castor bean)
Length = 159
Score = 48.1 bits (24), Expect = 3e-05
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 5 aagagtctttgtttggtagccagggatgacttgcct 40
||||| ||| |||||||||||| |||||||||||||
Sbjct: 155 aagagccttagtttggtagccaaggatgacttgcct 120
>RF00645;MIR169_2;AARH01001852.1/3885-3676 3694:Populus
trichocarpa
Length = 210
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 13 ttgtttggtagccagggatgacttgcct 40
|||||||||||||| |||||||||||||
Sbjct: 5 ttgtttggtagccaaggatgacttgcct 32
>RF00645;MIR169_2;AC216452.1/111234-111359 3694:Populus
trichocarpa
Length = 126
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 13 ttgtttggtagccagggatgacttgcct 40
|||||||||||||| |||||||||||||
Sbjct: 5 ttgtttggtagccaaggatgacttgcct 32
>RF00645;MIR169_2;AARH01000583.1/29935-30064 3694:Populus
trichocarpa
Length = 130
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 13 ttgtttggtagccagggatgacttgcct 40
|||||||||||||| |||||||||||||
Sbjct: 5 ttgtttggtagccaaggatgacttgcct 32
>RF00865;MIR169_5;ABIM01022203.1/1875-2012 3649:Carica papaya
(papaya)
Length = 138
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 14 tgtttggtagccagggatgacttgcct 40
||||||||||||| |||||||||||||
Sbjct: 123 tgtttggtagccaaggatgacttgcct 97
>RF00865;MIR169_5;AARH01006471.1/67165-67023 3694:Populus
trichocarpa
Length = 143
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 15 gtttggtagccagggatgacttgccta 41
|||||||||||| ||||||||||||||
Sbjct: 127 gtttggtagccaaggatgacttgccta 101
>RF00865;MIR169_5;AASG02003632.1/10304-10430 3988:Ricinus communis
(castor bean)
Length = 127
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 13 ttgtttggtagccagggatgacttgcc 39
|||||||||||||| ||||||||||||
Sbjct: 116 ttgtttggtagccaaggatgacttgcc 90
>RF00865;MIR169_5;ABXC01004203.1/1754-1629 4558:Sorghum bicolor
(sorghum)
Length = 126
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 16 tttggtagccagggatgacttgcctac 42
||||||||||| |||||||||||||||
Sbjct: 111 tttggtagccaaggatgacttgcctac 85
>RF00865;MIR169_5;ABXC01004204.1/1140-1015 4558:Sorghum bicolor
(sorghum)
Length = 126
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 16 tttggtagccagggatgacttgcctac 42
||||||||||| |||||||||||||||
Sbjct: 111 tttggtagccaaggatgacttgcctac 85
>RF00645;MIR169_2;ABIM01022203.1/2003-1881 3649:Carica papaya
(papaya)
Length = 123
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 14 tgtttggtagccagggatgacttgcct 40
||||||||||||| |||||||||||||
Sbjct: 7 tgtttggtagccaaggatgacttgcct 33
>RF00645;MIR169_2;AARH01006471.1/67030-67159 3694:Populus
trichocarpa
Length = 130
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 15 gtttggtagccagggatgacttgccta 41
|||||||||||| ||||||||||||||
Sbjct: 10 gtttggtagccaaggatgacttgccta 36
>RF00645;MIR169_2;ABXC01004203.1/1636-1748 4558:Sorghum bicolor
(sorghum)
Length = 113
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 16 tttggtagccagggatgacttgcctac 42
||||||||||| |||||||||||||||
Sbjct: 9 tttggtagccaaggatgacttgcctac 35
>RF00645;MIR169_2;ABXC01004204.1/1022-1134 4558:Sorghum bicolor
(sorghum)
Length = 113
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 16 tttggtagccagggatgacttgcctac 42
||||||||||| |||||||||||||||
Sbjct: 9 tttggtagccaaggatgacttgcctac 35
>RF00865;MIR169_5;AARH01003823.1/108214-108346 3694:Populus
trichocarpa
Length = 133
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 14 tgtttggtagccagggatgacttgcc 39
||||||||||||| ||||||||||||
Sbjct: 121 tgtttggtagccaaggatgacttgcc 96
>RF00865;MIR169_5;AARH01000472.1/145584-145453 3694:Populus
trichocarpa
Length = 132
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 108 ggcagtcaccttggctatgctaacag 133
||||||||||||||||||||| ||||
Sbjct: 37 ggcagtcaccttggctatgctgacag 12
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 14 tgtttggtagccagggatgacttgcc 39
||||||||||||| ||||||||||||
Sbjct: 120 tgtttggtagccaaggatgacttgcc 95
>RF00865;MIR169_5;AASG02001447.1/39455-39304 3988:Ricinus communis
(castor bean)
Length = 152
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 15 gtttggtagccagggatgacttgcct 40
|||||||||||| |||||||||||||
Sbjct: 138 gtttggtagccaaggatgacttgcct 113
>RF00645;MIR169_2;AARH01003823.1/108339-108220 3694:Populus
trichocarpa
Length = 120
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 14 tgtttggtagccagggatgacttgcc 39
||||||||||||| ||||||||||||
Sbjct: 6 tgtttggtagccaaggatgacttgcc 31
>RF00645;MIR169_2;AARH01000472.1/145460-145578 3694:Populus
trichocarpa
Length = 119
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 14 tgtttggtagccagggatgacttgcc 39
||||||||||||| ||||||||||||
Sbjct: 6 tgtttggtagccaaggatgacttgcc 31
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 108 ggcagtcaccttggctatgctaacag 133
||||||||||||||||||||| ||||
Sbjct: 89 ggcagtcaccttggctatgctgacag 114
>RF00645;MIR169_2;AASG02001447.1/39312-39449 3988:Ricinus communis
(castor bean)
Length = 138
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 15 gtttggtagccagggatgacttgcct 40
|||||||||||| |||||||||||||
Sbjct: 7 gtttggtagccaaggatgacttgcct 32
>RF00645;MIR169_2;AASG02002697.1/24326-24181 3988:Ricinus communis
(castor bean)
Length = 146
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 15 gtttggtagccagggatgacttgcct 40
|||||||||||| |||||||||||||
Sbjct: 8 gtttggtagccaaggatgacttgcct 33
>RF00645;MIR169_2;CAAP02000903.1/14911-14657 29760:Vitis vinifera
Length = 255
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 13 ttgtttggtagccagggatgacttgcctac 42
|||||||||||| | |||||||||||||||
Sbjct: 7 ttgtttggtagcgaaggatgacttgcctac 36
