miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00865;MIR169_5;AC216452.1/111365-111227 3694:Populus trichocarpa
Length = 139
Score = 58.0 bits (29), Expect = 3e-08
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 5 taagagttctgtttggtagccaaggatgagttgcctgctcc 45
||||||| |||||||||||||||||||| |||||||||||
Sbjct: 136 taagagtcttgtttggtagccaaggatgacttgcctgctcc 96
>RF00865;MIR169_5;AASG02003632.1/18586-18737 3988:Ricinus communis
(castor bean)
Length = 152
Score = 58.0 bits (29), Expect = 3e-08
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 2 agataagagttctgtttggtagccaaggatgagttgcctgctcct 46
|||||||||| |||||| ||||||||||||| ||||||||||||
Sbjct: 152 agataagagtcttgtttgatagccaaggatgacttgcctgctcct 108
>RF00865;MIR169_5;AARH01000583.1/30070-29928 3694:Populus
trichocarpa
Length = 143
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 14 tgtttggtagccaaggatgagttgcctgctcc 45
|||||||||||||||||||| |||||||||||
Sbjct: 131 tgtttggtagccaaggatgacttgcctgctcc 100
Score = 54.0 bits (27), Expect = 4e-07
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 77 caggcattcaccttggctaacttgactggctcttt 111
|||||| || |||||||||||||||||||||||||
Sbjct: 39 caggcagtctccttggctaacttgactggctcttt 5
>RF00645;MIR169_2;AC216452.1/111234-111359 3694:Populus
trichocarpa
Length = 126
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 14 tgtttggtagccaaggatgagttgcctgctcc 45
|||||||||||||||||||| |||||||||||
Sbjct: 6 tgtttggtagccaaggatgacttgcctgctcc 37
>RF00645;MIR169_2;AARH01000583.1/29935-30064 3694:Populus
trichocarpa
Length = 130
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 14 tgtttggtagccaaggatgagttgcctgctcc 45
|||||||||||||||||||| |||||||||||
Sbjct: 6 tgtttggtagccaaggatgacttgcctgctcc 37
Score = 50.1 bits (25), Expect = 6e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 77 caggcattcaccttggctaacttgactggctct 109
|||||| || |||||||||||||||||||||||
Sbjct: 98 caggcagtctccttggctaacttgactggctct 130
>RF00865;MIR169_5;ABIM01014270.1/4571-4728 3649:Carica papaya
(papaya)
Length = 158
Score = 54.0 bits (27), Expect = 4e-07
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 77 caggcattcaccttggctaacttgactggctcttttctt 115
|||||| ||| ||||||||||||||| ||||||||||||
Sbjct: 39 caggcagtcatcttggctaacttgacaggctcttttctt 1
Score = 50.1 bits (25), Expect = 6e-06
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 2 agataagagttctgtttggtagccaaggatgagttgcctgc 42
|||||||||| ||||||||||||||| |||| ||||||||
Sbjct: 158 agataagagtcttgtttggtagccaagaatgacttgcctgc 118
>RF00865;MIR169_5;ABIM01022203.1/1875-2012 3649:Carica papaya
(papaya)
Length = 138
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 13 ctgtttggtagccaaggatgagttgcctgc 42
||||||||||||||||||||| ||||||||
Sbjct: 124 ctgtttggtagccaaggatgacttgcctgc 95
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 89 ttggctaacttgactggctcttttct 114
|||||||||||||| |||||||||||
Sbjct: 27 ttggctaacttgacaggctcttttct 2
>RF00865;MIR169_5;AARH01003823.1/108214-108346 3694:Populus
trichocarpa
Length = 133
Score = 52.0 bits (26), Expect = 2e-06
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 2 agataagagttctgtttggtagccaaggatgagttgcc 39
|||||||||| |||||||||||||||||||| |||||
Sbjct: 133 agataagagtcgtgtttggtagccaaggatgacttgcc 96
>RF00865;MIR169_5;AARH01009234.1/70247-70410 3694:Populus
trichocarpa
Length = 164
Score = 52.0 bits (26), Expect = 2e-06
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 2 agataagagttctgtttggtagccaaggatgagttgcctgct 43
|||||||||| |||||| ||||||||||||| |||||||||
Sbjct: 164 agataagagtcttgtttgatagccaaggatgacttgcctgct 123
Score = 48.1 bits (24), Expect = 3e-05
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 63 tcttgttgggttgccaggcattcaccttggctaacttgactggctctt 110
||||||| |||||||||||| || |||||||||| |||| |||||||
Sbjct: 53 tcttgtttggttgccaggcagtctccttggctaagctgacaggctctt 6
>RF00865;MIR169_5;AASG02003941.1/7647-7771 3988:Ricinus communis
(castor bean)
Length = 125
Score = 52.0 bits (26), Expect = 2e-06
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 2 agataagagttctgtttggtagccaaggatgagttgcc 39
|||||||| ||||||||| ||||||||||||| |||||
Sbjct: 125 agataagaattctgtttgatagccaaggatgacttgcc 88
>RF00645;MIR169_2;ABIM01022203.1/2003-1881 3649:Carica papaya
(papaya)
Length = 123
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 13 ctgtttggtagccaaggatgagttgcctgc 42
||||||||||||||||||||| ||||||||
Sbjct: 6 ctgtttggtagccaaggatgacttgcctgc 35
>RF00865;MIR169_5;AARH01000583.1/30355-30198 3694:Populus
trichocarpa
Length = 158
Score = 50.1 bits (25), Expect = 6e-06
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 14 tgtttggtagccaaggatgagttgcctgctccttccaagag 54
|||||| ||||||||||||| ||||||||| ||| ||||||
Sbjct: 146 tgtttgatagccaaggatgacttgcctgctacttgcaagag 106
>RF00865;MIR169_5;AASG02002697.1/24175-24333 3988:Ricinus communis
(castor bean)
Length = 159
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 15 gtttggtagccaaggatgagttgcctgct 43
||||||||||||||||||| |||||||||
Sbjct: 145 gtttggtagccaaggatgacttgcctgct 117
>RF00865;MIR169_5;AASG02003941.1/7918-8066 3988:Ricinus communis
(castor bean)
Length = 149
Score = 50.1 bits (25), Expect = 6e-06
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 76 ccaggcattcaccttggctaacttgactggctctttt 112
||||||| ||||||||||||| ||||| |||||||||
Sbjct: 40 ccaggcagtcaccttggctaatttgacaggctctttt 4
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 21 tagccaaggatgagttgcctgctcct 46
||||||||||||| ||||||||||||
Sbjct: 130 tagccaaggatgacttgcctgctcct 105
>RF00865;MIR169_5;CAAP02000001.1/222970-222840 29760:Vitis vinifera
Length = 131
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 18 tggtagccaaggatgagttgcctgctcct 46
|||||||||||||||| ||||||||||||
Sbjct: 115 tggtagccaaggatgacttgcctgctcct 87
Score = 46.1 bits (23), Expect = 1e-04
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 77 caggcattcaccttggctaacttgactggctcttttctt 115
|||||| ||||||||||||||||||| ||| ||| ||||
Sbjct: 39 caggcagtcaccttggctaacttgacaggcacttctctt 1
>RF00645;MIR169_2;AARH01000583.1/30205-30349 3694:Populus
trichocarpa
Length = 145
Score = 50.1 bits (25), Expect = 6e-06
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 14 tgtttggtagccaaggatgagttgcctgctccttccaagag 54
|||||| ||||||||||||| ||||||||| ||| ||||||
Sbjct: 6 tgtttgatagccaaggatgacttgcctgctacttgcaagag 46
>RF00645;MIR169_2;AASG02003632.1/18730-18592 3988:Ricinus communis
(castor bean)
Length = 139
Score = 50.1 bits (25), Expect = 6e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 14 tgtttggtagccaaggatgagttgcctgctcct 46
|||||| ||||||||||||| ||||||||||||
Sbjct: 6 tgtttgatagccaaggatgacttgcctgctcct 38
>RF00645;MIR169_2;AASG02002697.1/24326-24181 3988:Ricinus communis
(castor bean)
Length = 146
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 15 gtttggtagccaaggatgagttgcctgct 43
||||||||||||||||||| |||||||||
Sbjct: 8 gtttggtagccaaggatgacttgcctgct 36
>RF00645;MIR169_2;CAAP02000001.1/222847-222964 29760:Vitis
vinifera
Length = 118
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 18 tggtagccaaggatgagttgcctgctcct 46
|||||||||||||||| ||||||||||||
Sbjct: 10 tggtagccaaggatgacttgcctgctcct 38
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 77 caggcattcaccttggctaacttgac 102
|||||| |||||||||||||||||||
Sbjct: 86 caggcagtcaccttggctaacttgac 111
>RF00865;MIR169_5;AY551202.1/194-30 3702:Arabidopsis thaliana (thale
cress)
Length = 165
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 16 tttggtagccaaggatgagttgcctgct 43
|||||||||||||||||| |||||||||
Sbjct: 151 tttggtagccaaggatgacttgcctgct 124
>RF00865;MIR169_5;AASG02003632.1/10304-10430 3988:Ricinus communis
(castor bean)
Length = 127
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 14 tgtttggtagccaaggatgagttgcctgctcc 45
|||||||||||||||||||| ||||| |||||
Sbjct: 115 tgtttggtagccaaggatgacttgcccgctcc 84
>RF00865;MIR169_5;AASG02001447.1/39455-39304 3988:Ricinus communis
(castor bean)
Length = 152
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 15 gtttggtagccaaggatgagttgcctgc 42
||||||||||||||||||| ||||||||
Sbjct: 138 gtttggtagccaaggatgacttgcctgc 111
>RF00645;MIR169_2;AY551202.1/37-188 3702:Arabidopsis thaliana
(thale cress)
Length = 152
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 16 tttggtagccaaggatgagttgcctgct 43
|||||||||||||||||| |||||||||
Sbjct: 8 tttggtagccaaggatgacttgcctgct 35
>RF00645;MIR169_2;AARH01001852.1/3885-3676 3694:Populus
trichocarpa
Length = 210
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 14 tgtttggtagccaaggatgagttgcctg 41
|||||||||||||||||||| |||||||
Sbjct: 6 tgtttggtagccaaggatgacttgcctg 33
>RF00645;MIR169_2;AASG02001447.1/39312-39449 3988:Ricinus communis
(castor bean)
Length = 138
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 15 gtttggtagccaaggatgagttgcctgc 42
||||||||||||||||||| ||||||||
Sbjct: 7 gtttggtagccaaggatgacttgcctgc 34
>RF00865;MIR169_5;ABIM01001939.1/16104-16248 3649:Carica papaya
(papaya)
Length = 145
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 14 tgtttggtagccaaggatgagttgcct 40
|||||||||||||||||||| ||||||
Sbjct: 131 tgtttggtagccaaggatgacttgcct 105
>RF00645;MIR169_2;ABIM01001939.1/16240-16110 3649:Carica papaya
(papaya)
Length = 131
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 14 tgtttggtagccaaggatgagttgcct 40
|||||||||||||||||||| ||||||
Sbjct: 7 tgtttggtagccaaggatgacttgcct 33
>RF00645;MIR169_2;AC216452.1/111514-111664 3694:Populus trichocarpa
Length = 151
Score = 46.1 bits (23), Expect = 1e-04
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 63 tcttgttgggttgccaggcattcaccttggctaacttgactggctct 109
||||||| |||||||||||| || |||||||||| |||| ||||||
Sbjct: 105 tcttgtttggttgccaggcagtctccttggctaagctgacaggctct 151
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 14 tgtttggtagccaaggatgagttgcctgct 43
|||||| ||||||||||||| |||||||||
Sbjct: 6 tgtttgatagccaaggatgacttgcctgct 35
>RF00865;MIR169_5;AB016889.1/44658-44824 3702:Arabidopsis thaliana
(thale cress)
Length = 167
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 16 tttggtagccaaggatgagttgcctg 41
|||||||||||||||||| |||||||
Sbjct: 153 tttggtagccaaggatgacttgcctg 128
>RF00865;MIR169_5;AY551200.1/193-29 3702:Arabidopsis thaliana (thale
cress)
Length = 165
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 16 tttggtagccaaggatgagttgcctg 41
|||||||||||||||||| |||||||
Sbjct: 151 tttggtagccaaggatgacttgcctg 126
>RF00865;MIR169_5;AARH01006471.1/67165-67023 3694:Populus
trichocarpa
Length = 143
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 15 gtttggtagccaaggatgagttgcct 40
||||||||||||||||||| ||||||
Sbjct: 127 gtttggtagccaaggatgacttgcct 102
>RF00865;MIR169_5;AARH01000472.1/145584-145453 3694:Populus
trichocarpa
Length = 132
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 14 tgtttggtagccaaggatgagttgcc 39
|||||||||||||||||||| |||||
Sbjct: 120 tgtttggtagccaaggatgacttgcc 95
>RF00865;MIR169_5;ABXC01001464.1/182397-182247 4558:Sorghum bicolor
(sorghum)
Length = 151
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 16 tttggtagccaaggatgagttgcctg 41
||||||||||||||||||| ||||||
Sbjct: 136 tttggtagccaaggatgagctgcctg 111
>RF00645;MIR169_2;AB016889.1/44816-44664 3702:Arabidopsis thaliana
(thale cress)
Length = 153
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 16 tttggtagccaaggatgagttgcctg 41
|||||||||||||||||| |||||||
Sbjct: 7 tttggtagccaaggatgacttgcctg 32
>RF00645;MIR169_2;AB016889.1/38604-38454 3702:Arabidopsis thaliana
(thale cress)
Length = 151
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 16 tttggtagccaaggatgagttgcctg 41
|||||||||||||||||| |||||||
Sbjct: 7 tttggtagccaaggatgacttgcctg 32
>RF00645;MIR169_2;AARH01006471.1/67030-67159 3694:Populus
trichocarpa
Length = 130
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 15 gtttggtagccaaggatgagttgcct 40
||||||||||||||||||| ||||||
Sbjct: 10 gtttggtagccaaggatgacttgcct 35
>RF00645;MIR169_2;AARH01003823.1/108339-108220 3694:Populus
trichocarpa
Length = 120
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 14 tgtttggtagccaaggatgagttgcc 39
|||||||||||||||||||| |||||
Sbjct: 6 tgtttggtagccaaggatgacttgcc 31
>RF00645;MIR169_2;AARH01000472.1/145460-145578 3694:Populus
trichocarpa
Length = 119
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 14 tgtttggtagccaaggatgagttgcc 39
|||||||||||||||||||| |||||
Sbjct: 6 tgtttggtagccaaggatgacttgcc 31
>RF00645;MIR169_2;AASG02003941.1/8059-7924 3988:Ricinus communis
(castor bean)
Length = 136
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 21 tagccaaggatgagttgcctgctcct 46
||||||||||||| ||||||||||||
Sbjct: 13 tagccaaggatgacttgcctgctcct 38
Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 76 ccaggcattcaccttggctaacttgactggctct 109
||||||| ||||||||||||| ||||| ||||||
Sbjct: 103 ccaggcagtcaccttggctaatttgacaggctct 136
>RF00645;MIR169_2;ABXC01001464.1/182253-182392 4558:Sorghum
bicolor (sorghum)
Length = 140
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 16 tttggtagccaaggatgagttgcctg 41
||||||||||||||||||| ||||||
Sbjct: 10 tttggtagccaaggatgagctgcctg 35
