miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00645;MIR169_2;AL161555.2/100990-100886 3702:Arabidopsis
thaliana (thale cress)
Length = 105
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 20 ttgagccaaggatgacttgccggg 43
||||||||||||||||||||||||
Sbjct: 10 ttgagccaaggatgacttgccggg 33
>RF00645;MIR169_2;AC157504.2/27710-27818 3880:Medicago truncatula
(barrel medic)
Length = 109
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 19 tttgagccaaggatgacttgccgg 42
||||||||||||||||||||||||
Sbjct: 9 tttgagccaaggatgacttgccgg 32
>RF00645;MIR169_2;BABK01002592.1/3832-3946 34305:Lotus japonicus
Length = 115
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 19 tttgagccaaggatgacttgccgg 42
||||||||||||||||||||||||
Sbjct: 9 tttgagccaaggatgacttgccgg 32
>RF00645;MIR169_2;AB022220.1/69927-69801 3702:Arabidopsis thaliana
(thale cress)
Length = 127
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 20 ttgagccaaggatgacttgccgg 42
|||||||||||||||||||||||
Sbjct: 10 ttgagccaaggatgacttgccgg 32
>RF00645;MIR169_2;AARH01007603.1/200394-200284 3694:Populus
trichocarpa
Length = 111
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 19 tttgagccaaggatgacttgccg 41
|||||||||||||||||||||||
Sbjct: 9 tttgagccaaggatgacttgccg 31
>RF00645;MIR169_2;AC157504.2/38883-38997 3880:Medicago truncatula
(barrel medic)
Length = 115
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 22 gagccaaggatgacttgccgggatatt 48
||||||||||||||||||||| |||||
Sbjct: 12 gagccaaggatgacttgccggtatatt 38
>RF00645;MIR169_2;CAAP02000146.1/86923-86822 29760:Vitis vinifera
Length = 102
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 20 ttgagccaaggatgacttgccgg 42
|||||||||||||||||||||||
Sbjct: 10 ttgagccaaggatgacttgccgg 32
>RF00645;MIR169_2;AM466421.1/3134-3032 29760:Vitis vinifera
Length = 103
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 19 tttgagccaaggatgacttgccg 41
|||||||||||||||||||||||
Sbjct: 9 tttgagccaaggatgacttgccg 31
>RF00645;MIR169_2;AY551196.1/39-136 3702:Arabidopsis thaliana
(thale cress)
Length = 98
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 20 ttgagccaaggatgacttgccg 41
||||||||||||||||||||||
Sbjct: 10 ttgagccaaggatgacttgccg 31
>RF00645;MIR169_2;AC024260.4/30609-30513 3702:Arabidopsis thaliana
(thale cress)
Length = 97
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 20 ttgagccaaggatgacttgccg 41
||||||||||||||||||||||
Sbjct: 10 ttgagccaaggatgacttgccg 31
>RF00645;MIR169_2;BABK01041096.1/153-266 34305:Lotus japonicus
Length = 114
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 tgagccaaggatgacttgccgg 42
||||||||||||||||||||||
Sbjct: 11 tgagccaaggatgacttgccgg 32
