miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00643;MIR171_1;ABXC01000488.1/1154-1044 4558:Sorghum bicolor
(sorghum)
Length = 111
Score = 61.9 bits (31), Expect = 2e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 93 tctgattgagccgtgccaatatcttagaactcttt 127
||||||||||||||||||||||||||| |||||||
Sbjct: 77 tctgattgagccgtgccaatatcttagtactcttt 111
>RF00643;MIR171_1;AC215372.2/27425-27538 4081:Solanum lycopersicum
Length = 114
Score = 60.0 bits (30), Expect = 8e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 12 agtaactgtgatattggcctggttcactcagaca 45
||||||| ||||||||||||||||||||||||||
Sbjct: 2 agtaactttgatattggcctggttcactcagaca 35
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 95 tgattgagccgtgccaatatct 116
||||||||||||||||||||||
Sbjct: 82 tgattgagccgtgccaatatct 103
>RF00643;MIR171_1;AASG02019837.1/638-762 3988:Ricinus communis
(castor bean)
Length = 125
Score = 58.0 bits (29), Expect = 3e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 18 tgtgatattggcctggttcactcagacat 46
|||||||||||||||||||||||||||||
Sbjct: 8 tgtgatattggcctggttcactcagacat 36
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 95 tgattgagccgtgccaatatct 116
||||||||||||||||||||||
Sbjct: 93 tgattgagccgtgccaatatct 114
>RF00643;MIR171_1;AACV01007865.1/2509-2381 39947:Oryza sativa
Japonica Group
Length = 129
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 88 tttggtctgattgagccgtgccaatatc 115
||||||||||||||||||||||||||||
Sbjct: 90 tttggtctgattgagccgtgccaatatc 117
>RF00643;MIR171_1;AARH01001039.1/225464-225596 3694:Populus
trichocarpa
Length = 133
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 93 tctgattgagccgtgccaatatcttag 119
|||||||||||||||||||||||||||
Sbjct: 99 tctgattgagccgtgccaatatcttag 125
>RF00643;MIR171_1;EU940714.1/212-315 4577:Zea mays
Length = 104
Score = 54.0 bits (27), Expect = 5e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 93 tctgattgagccgtgccaatatcttagaactcttt 127
|||||||||||||||||||||||| || |||||||
Sbjct: 70 tctgattgagccgtgccaatatctcagtactcttt 104
>RF00643;MIR171_1;EU946837.1/362-465 4577:Zea mays
Length = 104
Score = 54.0 bits (27), Expect = 5e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 93 tctgattgagccgtgccaatatcttagaactcttt 127
|||||||||||||||||||||||| || |||||||
Sbjct: 70 tctgattgagccgtgccaatatctcagtactcttt 104
>RF00643;MIR171_1;AC215662.2/9608-9473 4537:Oryza punctata
Length = 136
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 93 tctgattgagccgtgccaatatcttag 119
|||||||||||||||||||||||||||
Sbjct: 102 tctgattgagccgtgccaatatcttag 128
>RF00643;MIR171_1;AAAA02007796.1/27966-27846 39946:Oryza sativa
Indica Group
Length = 121
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 93 tctgattgagccgtgccaatatcttag 119
|||||||||||||||||||||||||||
Sbjct: 87 tctgattgagccgtgccaatatcttag 113
>RF00643;MIR171_1;AP008209.1/1950936-1951056 39947:Oryza sativa
Japonica Group
Length = 121
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 93 tctgattgagccgtgccaatatcttag 119
|||||||||||||||||||||||||||
Sbjct: 87 tctgattgagccgtgccaatatcttag 113
>RF00643;MIR171_1;ABIM01002570.1/7961-8103 3649:Carica papaya
(papaya)
Length = 143
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 20 tgatattggcctggttcactcagaca 45
||||||||||||||||||||||||||
Sbjct: 10 tgatattggcctggttcactcagaca 35
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 95 tgattgagccgtgccaatatct 116
||||||||||||||||||||||
Sbjct: 111 tgattgagccgtgccaatatct 132
>RF00643;MIR171_1;BABK01108397.1/266-409 34305:Lotus japonicus
Length = 144
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 21 gatattggcctggttcactcagacat 46
||||||||||||||||||||||||||
Sbjct: 11 gatattggcctggttcactcagacat 36
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 95 tgattgagccgtgccaatatct 116
||||||||||||||||||||||
Sbjct: 112 tgattgagccgtgccaatatct 133
>RF00643;MIR171_1;ABXC01000737.1/81777-81641 4558:Sorghum bicolor
(sorghum)
Length = 137
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 93 tctgattgagccgtgccaatatcttagaactctt 126
|||||||||||||||||||||||| || ||||||
Sbjct: 103 tctgattgagccgtgccaatatctcagtactctt 136
>RF00643;MIR171_1;ABIM01014311.1/7039-6927 3649:Carica papaya
(papaya)
Length = 113
Score = 50.1 bits (25), Expect = 8e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 87 ttttggtctgattgagccgtgccaatatc 115
|||| ||||||||||||||||||||||||
Sbjct: 75 ttttagtctgattgagccgtgccaatatc 103
>RF00643;MIR171_1;AASG02000279.1/67999-67862 3988:Ricinus communis
(castor bean)
Length = 138
Score = 50.1 bits (25), Expect = 8e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 95 tgattgagccgtgccaatatcttag 119
|||||||||||||||||||||||||
Sbjct: 106 tgattgagccgtgccaatatcttag 130
>RF00643;MIR171_1;AC189627.2/36180-36072 51351:Brassica rapa
subsp. pekinensis
Length = 109
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 20 tgatattggcctggttcactcaga 43
||||||||||||||||||||||||
Sbjct: 10 tgatattggcctggttcactcaga 33
>RF00643;MIR171_1;EU549081.1/305-220 3702:Arabidopsis thaliana
(thale cress)
Length = 86
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 20 tgatattggcctggttcactcaga 43
||||||||||||||||||||||||
Sbjct: 10 tgatattggcctggttcactcaga 33
>RF00643;MIR171_1;EU549097.1/220-333 3702:Arabidopsis thaliana
(thale cress)
Length = 114
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 20 tgatattggcctggttcactcaga 43
||||||||||||||||||||||||
Sbjct: 10 tgatattggcctggttcactcaga 33
>RF00643;MIR171_1;AC150705.17/109871-109755 3880:Medicago
truncatula (barrel medic)
Length = 117
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 21 gatattggcctggttcactcagac 44
||||||||||||||||||||||||
Sbjct: 11 gatattggcctggttcactcagac 34
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 95 tgattgagccgtgccaatatct 116
||||||||||||||||||||||
Sbjct: 85 tgattgagccgtgccaatatct 106
>RF00643;MIR171_1;BABK01022931.1/1462-1563 34305:Lotus japonicus
Length = 102
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 92 gtctgattgagccgtgccaatatc 115
||||||||||||||||||||||||
Sbjct: 67 gtctgattgagccgtgccaatatc 90
>RF00643;MIR171_1;AAAA02030424.1/14947-15083 39946:Oryza sativa
Indica Group
Length = 137
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 93 tctgattgagccgtgccaatatct 116
||||||||||||||||||||||||
Sbjct: 103 tctgattgagccgtgccaatatct 126
>RF00643;MIR171_1;AY728471.1/4-115 3694:Populus trichocarpa
Length = 112
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 21 gatattggcctggttcactcaga 43
|||||||||||||||||||||||
Sbjct: 1 gatattggcctggttcactcaga 23
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 95 tgattgagccgtgccaatatct 116
||||||||||||||||||||||
Sbjct: 90 tgattgagccgtgccaatatct 111
>RF00643;MIR171_1;AY871043.1/2-86 3694:Populus trichocarpa
Length = 85
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 93 tctgattgagccgtgccaatatc 115
|||||||||||||||||||||||
Sbjct: 61 tctgattgagccgtgccaatatc 83
>RF00643;MIR171_1;AY728466.1/3-80 3694:Populus trichocarpa
Length = 78
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 93 tctgattgagccgtgccaatatc 115
|||||||||||||||||||||||
Sbjct: 54 tctgattgagccgtgccaatatc 76
>RF00643;MIR171_1;AASG02007113.1/1812-1912 3988:Ricinus communis
(castor bean)
Length = 101
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 93 tctgattgagccgtgccaatatc 115
|||||||||||||||||||||||
Sbjct: 67 tctgattgagccgtgccaatatc 89
>RF00643;MIR171_1;AASG02006362.1/4770-4867 3988:Ricinus communis
(castor bean)
Length = 98
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 93 tctgattgagccgtgccaatatc 115
|||||||||||||||||||||||
Sbjct: 64 tctgattgagccgtgccaatatc 86
>RF00643;MIR171_1;CAAP02001068.1/13036-12938 29760:Vitis vinifera
Length = 99
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 93 tctgattgagccgtgccaatatc 115
|||||||||||||||||||||||
Sbjct: 65 tctgattgagccgtgccaatatc 87
>RF00643;MIR171_1;CAAP02002421.1/13383-13479 29760:Vitis vinifera
Length = 97
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 93 tctgattgagccgtgccaatatc 115
|||||||||||||||||||||||
Sbjct: 63 tctgattgagccgtgccaatatc 85
>RF00643;MIR171_1;BT035609.1/466-577 4577:Zea mays
Length = 112
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 93 tctgattgagccgtgccaatatc 115
|||||||||||||||||||||||
Sbjct: 78 tctgattgagccgtgccaatatc 100
>RF00643;MIR171_1;ABXC01004625.1/104342-104456 4558:Sorghum bicolor
(sorghum)
Length = 115
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 93 tctgattgagccgtgccaatatc 115
|||||||||||||||||||||||
Sbjct: 81 tctgattgagccgtgccaatatc 103
>RF00643;MIR171_1;BABK01005968.1/2486-2599 34305:Lotus japonicus
Length = 114
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 95 tgattgagccgtgccaatatct 116
||||||||||||||||||||||
Sbjct: 82 tgattgagccgtgccaatatct 103
>RF00643;MIR171_1;AM486682.2/2891-2758 29760:Vitis vinifera
Length = 134
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 95 tgattgagccgtgccaatatct 116
||||||||||||||||||||||
Sbjct: 102 tgattgagccgtgccaatatct 123
>RF00643;MIR171_1;CAAP02019255.1/437-320 29760:Vitis vinifera
Length = 118
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 95 tgattgagccgtgccaatatct 116
||||||||||||||||||||||
Sbjct: 86 tgattgagccgtgccaatatct 107
