miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00452;mir-172;ABIM01001078.1/716-916 3649:Carica papaya (papaya)
Length = 201
Score = 69.9 bits (35), Expect = 1e-11
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 111 tatgggaatcttgatgatgctgcagcggcaataaa 145
|||||||||||||||||||||||||||||||||||
Sbjct: 167 tatgggaatcttgatgatgctgcagcggcaataaa 201
Score = 63.9 bits (32), Expect = 6e-10
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 8 ctgtttgctgatggagcatcatcaagattcacaaaa 43
|||||||| |||||||||||||||||||||||||||
Sbjct: 1 ctgtttgcggatggagcatcatcaagattcacaaaa 36
>RF00452;mir-172;AASG02005670.1/14724-14879 3988:Ricinus communis
(castor bean)
Length = 156
Score = 69.9 bits (35), Expect = 1e-11
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 8 ctgtttgctgatggagcatcatcaagattcacaaa 42
|||||||||||||||||||||||||||||||||||
Sbjct: 1 ctgtttgctgatggagcatcatcaagattcacaaa 35
Score = 69.9 bits (35), Expect = 1e-11
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 111 tatgggaatcttgatgatgctgcagcggcaataaa 145
|||||||||||||||||||||||||||||||||||
Sbjct: 122 tatgggaatcttgatgatgctgcagcggcaataaa 156
>RF00452;mir-172;AARH01004394.1/257332-257189 3694:Populus
trichocarpa
Length = 144
Score = 65.9 bits (33), Expect = 2e-10
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 113 tgggaatcttgatgatgctgcagcggcaataaa 145
|||||||||||||||||||||||||||||||||
Sbjct: 112 tgggaatcttgatgatgctgcagcggcaataaa 144
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 8 ctgtttgctgatggagcatcatcaagattcacaa 41
|||||||| ||||||||||||||||||||||||
Sbjct: 1 ctgtttgcctatggagcatcatcaagattcacaa 34
>RF00452;mir-172;AM481129.2/11694-11833 29760:Vitis vinifera
Length = 140
Score = 65.9 bits (33), Expect = 2e-10
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 113 tgggaatcttgatgatgctgcagcggcaataaa 145
|||||||||||||||||||||||||||||||||
Sbjct: 108 tgggaatcttgatgatgctgcagcggcaataaa 140
Score = 60.0 bits (30), Expect = 9e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 8 ctgtttgctgatggagcatcatcaagattcacaa 41
|||||||| |||||||||||||||||||||||||
Sbjct: 1 ctgtttgcggatggagcatcatcaagattcacaa 34
>RF00452;mir-172;BABK01012763.1/1927-2053 34305:Lotus japonicus
Length = 127
Score = 58.0 bits (29), Expect = 4e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 9 tgtttgctgatggagcatcatcaagattcacaa 41
||||||||| |||||||||||||||||||||||
Sbjct: 2 tgtttgctggtggagcatcatcaagattcacaa 34
>RF00452;mir-172;EU549227.1/243-121 3702:Arabidopsis thaliana (thale
cress)
Length = 123
Score = 56.0 bits (28), Expect = 1e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 107 tatgtatgggaatcttgatgatgctgcagcggcaat 142
|||||||| ||||||||||||||||||||| |||||
Sbjct: 85 tatgtatgagaatcttgatgatgctgcagctgcaat 120
Score = 54.0 bits (27), Expect = 6e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 8 ctgtttgctgatggagcatcatcaagattcacaaa 42
||||| |||| ||||||||||||||||||||||||
Sbjct: 1 ctgttcgctgttggagcatcatcaagattcacaaa 35
>RF00452;mir-172;EU549232.1/232-344 3702:Arabidopsis thaliana (thale
cress)
Length = 113
Score = 54.0 bits (27), Expect = 6e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 116 gaatcttgatgatgctgcagcggcaat 142
|||||||||||||||||||||||||||
Sbjct: 84 gaatcttgatgatgctgcagcggcaat 110
>RF00452;mir-172;AY728437.1/1-132 3694:Populus trichocarpa
Length = 132
Score = 54.0 bits (27), Expect = 6e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 113 tgggaatcttgatgatgctgcagcggc 139
|||||||||||||||||||||||||||
Sbjct: 106 tgggaatcttgatgatgctgcagcggc 132
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 17 gatggagcatcatcaagattcacaaa 42
||||||||| ||||||||||||||||
Sbjct: 4 gatggagcaccatcaagattcacaaa 29
>RF00452;mir-172;AARH01000428.1/33766-33584 3694:Populus trichocarpa
Length = 183
Score = 54.0 bits (27), Expect = 6e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 111 tatgggaatcttgatgatgctgcagcggcaa 141
|||||||||||||||||||||||| ||||||
Sbjct: 149 tatgggaatcttgatgatgctgcatcggcaa 179
>RF00452;mir-172;AARH01003860.1/86743-86610 3694:Populus trichocarpa
Length = 134
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 112 atgggaatcttgatgatgctgcagcggcaa 141
||||||||||||||||||||||| ||||||
Sbjct: 101 atgggaatcttgatgatgctgcatcggcaa 130
>RF00452;mir-172;AARH01003915.1/155600-155740 3694:Populus
trichocarpa
Length = 141
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 116 gaatcttgatgatgctgcagcggcaataaa 145
||||||||||||||||||| ||||||||||
Sbjct: 112 gaatcttgatgatgctgcatcggcaataaa 141
Score = 48.1 bits (24), Expect = 4e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 9 tgtttgctgatggagcatcatcaagattcaca 40
||||||| | ||||||||||||||||||||||
Sbjct: 2 tgtttgcgggtggagcatcatcaagattcaca 33
>RF00452;mir-172;AC182714.2/88903-88742 3694:Populus trichocarpa
Length = 162
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 116 gaatcttgatgatgctgcagcggcaataaa 145
||||||||||||||||||| ||||||||||
Sbjct: 133 gaatcttgatgatgctgcatcggcaataaa 162
>RF00452;mir-172;CAAP02003282.1/14594-14705 29760:Vitis vinifera
Length = 112
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 116 gaatcttgatgatgctgcagcggcaataaa 145
||||||||||||||||||| ||||||||||
Sbjct: 83 gaatcttgatgatgctgcatcggcaataaa 112
>RF00452;mir-172;ABXC01006306.1/12162-12041 4558:Sorghum bicolor
(sorghum)
Length = 122
Score = 50.1 bits (25), Expect = 9e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 9 tgtttgctgatggagcatcatcaagattc 37
|||||||||||| ||||||||||||||||
Sbjct: 121 tgtttgctgatgcagcatcatcaagattc 93
>RF00452;mir-172;AP003298.3/17210-16973 39947:Oryza sativa Japonica
Group
Length = 238
Score = 50.1 bits (25), Expect = 9e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 106 atatgtatgggaatcttgatgatgctgca 134
|||||| ||||||||||||||||||||||
Sbjct: 199 atatgtgtgggaatcttgatgatgctgca 227
>RF00452;mir-172;BABK01027900.1/1116-1276 34305:Lotus japonicus
Length = 161
Score = 48.1 bits (24), Expect = 4e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 9 tgtttgctgatggagcatcatcaagattcaca 40
|||||||||||| |||| ||||||||||||||
Sbjct: 2 tgtttgctgatgtagcaccatcaagattcaca 33
>RF00452;mir-172;CAAP02002749.1/38930-38796 29760:Vitis vinifera
Length = 135
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 111 tatgggaatcttgatgatgctgca 134
||||||||||||||||||||||||
Sbjct: 101 tatgggaatcttgatgatgctgca 124
>RF00452;mir-172;AM457961.2/1662-1782 29760:Vitis vinifera
Length = 121
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 116 gaatcttgatgatgctgcagcggcaata 143
||||||||||||||||||| ||||||||
Sbjct: 92 gaatcttgatgatgctgcatcggcaata 119
>RF00452;mir-172;CAAP02000586.1/29172-29291 29760:Vitis vinifera
Length = 120
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 116 gaatcttgatgatgctgcagcggcaata 143
||||||||||||||||||| ||||||||
Sbjct: 91 gaatcttgatgatgctgcatcggcaata 118
>RF00452;mir-172;AC165172.2/39243-39397 4577:Zea mays
Length = 155
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 107 tatgtatgggaatcttgatgatgctgca 134
||||| ||||||||||||||||||||||
Sbjct: 117 tatgtgtgggaatcttgatgatgctgca 144
>RF00452;mir-172;EU974220.1/371-523 4577:Zea mays
Length = 153
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 107 tatgtatgggaatcttgatgatgctgca 134
||||| ||||||||||||||||||||||
Sbjct: 115 tatgtgtgggaatcttgatgatgctgca 142
>RF00452;mir-172;ABXC01002369.1/66790-66601 4558:Sorghum bicolor
(sorghum)
Length = 190
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 107 tatgtatgggaatcttgatgatgctgca 134
||||| ||||||||||||||||||||||
Sbjct: 152 tatgtgtgggaatcttgatgatgctgca 179
>RF00452;mir-172;EU869069.1/352-463 39946:Oryza sativa Indica Group
Length = 112
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 10 gtttgctgatggagcatcatcaagattc 37
||||||||||| ||||||||||||||||
Sbjct: 110 gtttgctgatgcagcatcatcaagattc 83
>RF00452;mir-172;ABIM01015449.1/13104-12974 3649:Carica papaya
(papaya)
Length = 131
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 112 atgggaatcttgatgatgctgca 134
|||||||||||||||||||||||
Sbjct: 98 atgggaatcttgatgatgctgca 120
>RF00452;mir-172;FM163855.1/191-306 3702:Arabidopsis thaliana (thale
cress)
Length = 116
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 116 gaatcttgatgatgctgcagcggcaat 142
||||||||||||||||||| |||||||
Sbjct: 87 gaatcttgatgatgctgcatcggcaat 113
>RF00452;mir-172;EU549250.1/242-366 3702:Arabidopsis thaliana (thale
cress)
Length = 125
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 11 tttgctgatggagcatcatcaagattc 37
|||||||||| ||||||||||||||||
Sbjct: 122 tttgctgatgcagcatcatcaagattc 96
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 113 tgggaatcttgatgatgctgca 134
||||||||||||||||||||||
Sbjct: 93 tgggaatcttgatgatgctgca 114
>RF00452;mir-172;AASG02019478.1/457-599 3988:Ricinus communis
(castor bean)
Length = 143
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 11 tttgctgatggagcatcatcaagattc 37
|||||||||| ||||||||||||||||
Sbjct: 140 tttgctgatgcagcatcatcaagattc 114
>RF00452;mir-172;BABK01039752.1/451-284 34305:Lotus japonicus
Length = 168
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 11 tttgctgatggagcatcatcaagattc 37
|||||||||| ||||||||||||||||
Sbjct: 165 tttgctgatgcagcatcatcaagattc 139
>RF00452;mir-172;CAAP02002084.1/47016-46906 29760:Vitis vinifera
Length = 111
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 14 gctgatggagcatcatcaagattcaca 40
||||||| |||||||||||||||||||
Sbjct: 7 gctgatgcagcatcatcaagattcaca 33
>RF00452;mir-172;ABIM01012229.1/3274-3102 3649:Carica papaya
(papaya)
Length = 173
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 116 gaatcttgatgatgctgcagcggcaataaa 145
||||||||||||||||||| |||| |||||
Sbjct: 144 gaatcttgatgatgctgcatcggccataaa 173
>RF00452;mir-172;AC189648.2/24074-23978 51351:Brassica rapa subsp.
pekinensis
Length = 97
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 113 tgggaatcttgatgatgctgca 134
||||||||||||||||||||||
Sbjct: 65 tgggaatcttgatgatgctgca 86
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 12 ttgctgatggagcatcatcaagattc 37
||||||||| ||||||||||||||||
Sbjct: 93 ttgctgatgcagcatcatcaagattc 68
>RF00452;mir-172;AASG02011039.1/5310-5468 3988:Ricinus communis
(castor bean)
Length = 159
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 116 gaatcttgatgatgctgcagcggcaataaa 145
||||||||||||||||||| | ||||||||
Sbjct: 130 gaatcttgatgatgctgcatcagcaataaa 159
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 12 ttgctgatggagcatcatcaagattc 37
||||||||| ||||||||||||||||
Sbjct: 155 ttgctgatgcagcatcatcaagattc 130
>RF00452;mir-172;BABK01107385.1/174-85 34305:Lotus japonicus
Length = 90
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 116 gaatcttgatgatgctgcagcggcaataaa 145
||||||||||||||||||| | ||||||||
Sbjct: 61 gaatcttgatgatgctgcatcagcaataaa 90
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 12 ttgctgatggagcatcatcaagattc 37
||||||||| ||||||||||||||||
Sbjct: 86 ttgctgatgcagcatcatcaagattc 61
