miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00688;MIR394;DQ908352.1/346-226 3635:Gossypium hirsutum (upland
cotton)
Length = 121
Score = 67.9 bits (34), Expect = 3e-11
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 8 cttacagagtttattggcattctgtccacctcccatca 45
||||||||||||||||||||||||||||||||| ||||
Sbjct: 1 cttacagagtttattggcattctgtccacctccaatca 38
Score = 67.9 bits (34), Expect = 3e-11
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 71 tctttcatggaggtgggcatactgccaactgggctctgttgg 112
||||||||||||||||||| ||||||||||| ||||||||||
Sbjct: 80 tctttcatggaggtgggcaaactgccaactgagctctgttgg 121
>RF00688;MIR394;AM428484.2/52366-52463 29760:Vitis vinifera
Length = 98
Score = 67.9 bits (34), Expect = 3e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 11 acagagtttattggcattctgtccacctcccatc 44
||||||||||||||||||||||||||||||||||
Sbjct: 4 acagagtttattggcattctgtccacctcccatc 37
>RF00688;MIR394;ABIM01007450.1/10865-10745 3649:Carica papaya
(papaya)
Length = 121
Score = 65.9 bits (33), Expect = 1e-10
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 8 cttacagagtttattggcattctgtccacctcc 40
|||||||||||||||||||||||||||||||||
Sbjct: 1 cttacagagtttattggcattctgtccacctcc 33
>RF00688;MIR394;AARH01002882.1/31556-31654 3694:Populus
trichocarpa
Length = 99
Score = 65.9 bits (33), Expect = 1e-10
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 8 cttacagagtttattggcattctgtccacctcc 40
|||||||||||||||||||||||||||||||||
Sbjct: 1 cttacagagtttattggcattctgtccacctcc 33
Score = 56.0 bits (28), Expect = 1e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 77 atggaggtgggcatactgccaactgggctctgttgg 112
||||||||||||||||||||||| | ||||||||||
Sbjct: 64 atggaggtgggcatactgccaaccgagctctgttgg 99
>RF00688;MIR394;AASG02000377.1/56114-56246 3988:Ricinus communis
(castor bean)
Length = 133
Score = 63.9 bits (32), Expect = 4e-10
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 77 atggaggtgggcatactgccaactgggctctgttgg 112
||||||||||||||||||||||||| ||||||||||
Sbjct: 98 atggaggtgggcatactgccaactgagctctgttgg 133
Score = 58.0 bits (29), Expect = 3e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 8 cttacagagtttattggcattctgtccacctcc 40
||||||||| |||||||||||||||||||||||
Sbjct: 1 cttacagagcttattggcattctgtccacctcc 33
>RF00688;MIR394;AARH01001039.1/148774-148676 3694:Populus
trichocarpa
Length = 99
Score = 61.9 bits (31), Expect = 2e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 78 tggaggtgggcatactgccaactgggctctgttgg 112
|||||||||||||||||||||||| ||||||||||
Sbjct: 65 tggaggtgggcatactgccaactgagctctgttgg 99
Score = 58.0 bits (29), Expect = 3e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 8 cttacagagtttattggcattctgtccacctcc 40
|||||||||||| ||||||||||||||||||||
Sbjct: 1 cttacagagttttttggcattctgtccacctcc 33
>RF00688;MIR394;AC189318.1/31773-31892 51351:Brassica rapa subsp.
pekinensis
Length = 120
Score = 50.1 bits (25), Expect = 7e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 8 cttacagagtttattggcattctgtccacctcc 40
||||||||||| ||||||||||||||||||||
Sbjct: 1 cttacagagttctttggcattctgtccacctcc 33
>RF00688;MIR394;AC189295.2/85926-86037 51351:Brassica rapa subsp.
pekinensis
Length = 112
Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 8 cttacagagtttattggcattctgtccacctccc 41
||||||||| | |||||||||||||||||||||
Sbjct: 1 cttacagagatctttggcattctgtccacctccc 34
>RF00688;MIR394;BABK01003371.1/1268-1359 34305:Lotus japonicus
Length = 92
Score = 44.1 bits (22), Expect = 4e-04
Identities = 32/34 (94%), Gaps = 1/34 (2%)
Strand = Plus / Plus
Query: 8 cttacagagtt-tattggcattctgtccacctcc 40
||||||||||| | ||||||||||||||||||||
Sbjct: 1 cttacagagttattttggcattctgtccacctcc 34
