miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00688;MIR394;ABIM01001091.1/17645-17548 3649:Carica papaya
(papaya)
Length = 98
Score = 71.9 bits (36), Expect = 2e-12
Identities = 36/36 (100%)
Strand = Plus / Minus
Query: 7 gttgcagagccaatttggcattctgtccacctccat 42
||||||||||||||||||||||||||||||||||||
Sbjct: 98 gttgcagagccaatttggcattctgtccacctccat 63
>RF00688;MIR394;CAAP02000005.1/40692-40598 29760:Vitis vinifera
Length = 95
Score = 65.9 bits (33), Expect = 1e-10
Identities = 36/37 (97%)
Strand = Plus / Minus
Query: 7 gttgcagagccaatttggcattctgtccacctccatg 43
|||||||||||| ||||||||||||||||||||||||
Sbjct: 95 gttgcagagccattttggcattctgtccacctccatg 59
>RF00688;MIR394;AASG02008916.1/699-813 3988:Ricinus communis
(castor bean)
Length = 115
Score = 63.9 bits (32), Expect = 5e-10
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 7 gttgcagagccaatttggcattctgtccacctccat 42
|||||||||||| |||||||||||||||||||||||
Sbjct: 1 gttgcagagccattttggcattctgtccacctccat 36
Score = 48.1 bits (24), Expect = 3e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 84 ttggaggcggccagtatgtcaaacaggctctgtaaa 119
||||||| |||||| ||||||||| |||||||||||
Sbjct: 80 ttggaggtggccagcatgtcaaactggctctgtaaa 115
>RF00688;MIR394;AM454446.1/19563-19456 29760:Vitis vinifera
Length = 108
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 11 cagagccaatttggcattctgtccacctccat 42
|||||||| |||||||||||||||||||||||
Sbjct: 104 cagagccattttggcattctgtccacctccat 73
>RF00688;MIR394;AARH01001039.1/148774-148676 3694:Populus
trichocarpa
Length = 99
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 20 tttggcattctgtccacctccat 42
|||||||||||||||||||||||
Sbjct: 13 tttggcattctgtccacctccat 35
>RF00688;MIR394;AC161863.21/83103-82984 3880:Medicago truncatula
(barrel medic)
Length = 120
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 20 tttggcattctgtccacctccat 42
|||||||||||||||||||||||
Sbjct: 14 tttggcattctgtccacctccat 36
>RF00688;MIR394;BABK01003371.1/1268-1359 34305:Lotus japonicus
Length = 92
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 20 tttggcattctgtccacctcca 41
||||||||||||||||||||||
Sbjct: 14 tttggcattctgtccacctcca 35
