miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00648;MIR396;AARH01007577.1/181152-181286 3694:Populus
trichocarpa
Length = 135
Score = 63.9 bits (32), Expect = 6e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 11 ctttgtattcttccacagctttcttgaactgc 42
||||||||||||||||||||||||||||||||
Sbjct: 1 ctttgtattcttccacagctttcttgaactgc 32
Score = 50.1 bits (25), Expect = 9e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 113 gttcaataaagctgtgggaagatac 137
|||||||||||||||||||||||||
Sbjct: 106 gttcaataaagctgtgggaagatac 130
>RF00648;MIR396;AASG02007435.1/277-442 3988:Ricinus communis
(castor bean)
Length = 166
Score = 63.9 bits (32), Expect = 6e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 11 ctttgtattcttccacagctttcttgaactgc 42
||||||||||||||||||||||||||||||||
Sbjct: 1 ctttgtattcttccacagctttcttgaactgc 32
Score = 56.0 bits (28), Expect = 1e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 103 tgttgttgcagttcaataaagctgtgggaagatacg 138
|||| |||| ||||||||||||||||||||||||||
Sbjct: 127 tgtttttgcggttcaataaagctgtgggaagatacg 162
>RF00648;MIR396;AC153121.15/56895-56790 3880:Medicago truncatula
(barrel medic)
Length = 106
Score = 63.9 bits (32), Expect = 6e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 11 ctttgtattcttccacagctttcttgaactgc 42
||||||||||||||||||||||||||||||||
Sbjct: 1 ctttgtattcttccacagctttcttgaactgc 32
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 108 ttgcagttcaataaagctgtgggaagatac 137
|||| |||||||||||||||||||||||||
Sbjct: 72 ttgcggttcaataaagctgtgggaagatac 101
>RF00648;MIR396;AP010531.1/68027-68126 34305:Lotus japonicus
Length = 100
Score = 63.9 bits (32), Expect = 6e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 11 ctttgtattcttccacagctttcttgaactgc 42
||||||||||||||||||||||||||||||||
Sbjct: 1 ctttgtattcttccacagctttcttgaactgc 32
Score = 50.1 bits (25), Expect = 9e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 108 ttgcagttcaataaagctgtgggaagata 136
|||| ||||||||||||||||||||||||
Sbjct: 66 ttgcggttcaataaagctgtgggaagata 94
>RF00648;MIR396;AM489352.2/7330-7448 29760:Vitis vinifera
Length = 119
Score = 63.9 bits (32), Expect = 6e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 11 ctttgtattcttccacagctttcttgaactgc 42
||||||||||||||||||||||||||||||||
Sbjct: 1 ctttgtattcttccacagctttcttgaactgc 32
Score = 54.0 bits (27), Expect = 6e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 107 gttgcagttcaataaagctgtgggaagatac 137
||||| |||||||||||||||||||||||||
Sbjct: 84 gttgcggttcaataaagctgtgggaagatac 114
>RF00648;MIR396;ABIM01011222.1/24137-24037 3649:Carica papaya
(papaya)
Length = 101
Score = 61.9 bits (31), Expect = 2e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 12 tttgtattcttccacagctttcttgaactgc 42
|||||||||||||||||||||||||||||||
Sbjct: 2 tttgtattcttccacagctttcttgaactgc 32
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 108 ttgcagttcaataaagctgtgggaagatac 137
|||| |||||||||||||||||||||||||
Sbjct: 67 ttgcggttcaataaagctgtgggaagatac 96
>RF00648;MIR396;AC006250.4/85478-85629 3702:Arabidopsis thaliana
(thale cress)
Length = 152
Score = 58.0 bits (29), Expect = 4e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 14 tgtattcttccacagctttcttgaactgc 42
|||||||||||||||||||||||||||||
Sbjct: 4 tgtattcttccacagctttcttgaactgc 32
Score = 54.0 bits (27), Expect = 6e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 108 ttgcagttcaataaagctgtgggaagatacggaca 142
|||| ||||||||||||||||||||||||| ||||
Sbjct: 118 ttgcggttcaataaagctgtgggaagatacagaca 152
>RF00648;MIR396;AARH01002977.1/26105-26230 3694:Populus trichocarpa
Length = 126
Score = 58.0 bits (29), Expect = 4e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 105 ttgttgcagttcaataaagctgtgggaagatac 137
||||||| |||||||||||||||||||||||||
Sbjct: 89 ttgttgcggttcaataaagctgtgggaagatac 121
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 15 gtattcttccacagctttcttgaactgc 42
||||||||||||||||||||||||||||
Sbjct: 5 gtattcttccacagctttcttgaactgc 32
>RF00648;MIR396;EU941272.1/182-300 4577:Zea mays
Length = 119
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 19 tcttccacagctttcttgaactgc 42
||||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactgc 32
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 110 gcagttcaataaagctgtgggaa 132
|||||||||||||||||||||||
Sbjct: 87 gcagttcaataaagctgtgggaa 109
>RF00648;MIR396;ABXC01006376.1/116039-116148 4558:Sorghum bicolor
(sorghum)
Length = 110
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 19 tcttccacagctttcttgaactgc 42
||||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactgc 32
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 109 tgcagttcaataaagctgtgggaa 132
||||||||||||||||||||||||
Sbjct: 77 tgcagttcaataaagctgtgggaa 100
>RF00648;MIR396;ABXC01002982.1/44228-44122 4558:Sorghum bicolor
(sorghum)
Length = 107
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 19 tcttccacagctttcttgaactgc 42
||||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactgc 32
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 110 gcagttcaataaagctgtgggaa 132
|||||||||||||||||||||||
Sbjct: 75 gcagttcaataaagctgtgggaa 97
>RF00648;MIR396;AAAA02018332.1/10514-10398 39946:Oryza sativa
Indica Group
Length = 117
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 19 tcttccacagctttcttgaactgc 42
||||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactgc 32
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 109 tgcagttcaataaagctgtgggaa 132
||||||||||||||||||||||||
Sbjct: 84 tgcagttcaataaagctgtgggaa 107
>RF00648;MIR396;AP005056.2/134150-134304 39947:Oryza sativa
Japonica Group
Length = 155
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 19 tcttccacagctttcttgaactgc 42
||||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactgc 32
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 110 gcagttcaataaagctgtgggaa 132
|||||||||||||||||||||||
Sbjct: 123 gcagttcaataaagctgtgggaa 145
>RF00648;MIR396;ABIM01023164.1/6366-6248 3649:Carica papaya
(papaya)
Length = 119
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 19 tcttccacagctttcttgaactg 41
|||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactg 31
>RF00648;MIR396;AASG02002614.1/17574-17698 3988:Ricinus communis
(castor bean)
Length = 125
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 19 tcttccacagctttcttgaactg 41
|||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactg 31
>RF00648;MIR396;CAAP02002594.1/43203-43097 29760:Vitis vinifera
Length = 107
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 19 tcttccacagctttcttgaactg 41
|||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactg 31
>RF00648;MIR396;AASG02001279.1/18109-18241 3988:Ricinus communis
(castor bean)
Length = 133
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaactgctacttctt 50
|||||||||||||||||||| || ||||||
Sbjct: 11 ttccacagctttcttgaacttcttcttctt 40
