miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00648;MIR396;AASG02001279.1/18109-18241 3988:Ricinus communis
(castor bean)
Length = 133
Score = 58.0 bits (29), Expect = 3e-08
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 102 agaagttcaagaaagccgtggaaaagcatgaca 134
|||||||||||||||| ||||||||||||||||
Sbjct: 33 agaagttcaagaaagctgtggaaaagcatgaca 1
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 10 ttgccatgttattccacagctttcttgaactt 41
|||||||||| | |||||||||||||||||||
Sbjct: 133 ttgccatgttctcccacagctttcttgaactt 102
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaacttct 43
|||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaacttct 33
>RF00648;MIR396;AARH01007577.1/188194-188047 3694:Populus
trichocarpa
Length = 148
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 102 agaagttcaagaaagccgtggaaaagcatgac 133
|||||||||||||||| |||||||||||||||
Sbjct: 33 agaagttcaagaaagctgtggaaaagcatgac 2
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaacttct 43
|||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaacttct 33
>RF00648;MIR396;AARH01001850.1/327743-327639 3694:Populus
trichocarpa
Length = 105
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 102 agaagttcaagaaagccgtggaaaagcatgac 133
||||||||||||||||||||||| ||||||||
Sbjct: 33 agaagttcaagaaagccgtggaatagcatgac 2
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 11 tgccatgttattccacagctttcttgaacttc 42
||||||||| ||||||||||||||||||||||
Sbjct: 104 tgccatgtttttccacagctttcttgaacttc 73
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 14 catgttattccacagctttcttgaacttct 43
|||| |||||||| ||||||||||||||||
Sbjct: 4 catgctattccacggctttcttgaacttct 33
>RF00648;MIR396;AARH01003359.1/52522-52352 3694:Populus trichocarpa
Length = 171
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 104 aagttcaagaaagccgtggaaaagcatg 131
||||||||||||||||||||||||||||
Sbjct: 31 aagttcaagaaagccgtggaaaagcatg 4
>RF00648;MIR396;AC153121.15/48150-48253 3880:Medicago truncatula
(barrel medic)
Length = 104
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 102 agaagttcaagaaagccgtggaaaagcatgac 133
|||||||||||||||| |||||||||||||||
Sbjct: 33 agaagttcaagaaagctgtggaaaagcatgac 2
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaacttct 43
|||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaacttct 33
>RF00648;MIR396;AP010531.1/73143-73036 34305:Lotus japonicus
Length = 108
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 102 agaagttcaagaaagccgtggaaaagcatgac 133
|||||||||||||||| |||||||||||||||
Sbjct: 33 agaagttcaagaaagctgtggaaaagcatgac 2
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaacttct 43
|||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaacttct 33
>RF00648;MIR396;AM481354.2/2056-2230 29760:Vitis vinifera
Length = 175
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 104 aagttcaagaaagccgtggaaaagcatg 131
||||||||||||||||||||||||||||
Sbjct: 31 aagttcaagaaagccgtggaaaagcatg 4
>RF00648;MIR396;AARH01002977.1/33014-32858 3694:Populus trichocarpa
Length = 157
Score = 54.0 bits (27), Expect = 5e-07
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 103 gaagttcaagaaagccgtggaaaagcatgac 133
||||||||||||||| |||||||||||||||
Sbjct: 32 gaagttcaagaaagctgtggaaaagcatgac 2
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaacttc 42
||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaacttc 32
>RF00648;MIR396;AC209588.1/2779-2519 4081:Solanum lycopersicum
Length = 261
Score = 54.0 bits (27), Expect = 5e-07
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 98 aaagagaagttcaagaaagccgtggaaaagcatga 132
|||||||||||||||||||| |||||||| |||||
Sbjct: 37 aaagagaagttcaagaaagctgtggaaaaacatga 3
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 14 catgttattccacagctttcttgaacttct 43
|||||| |||||||||||||||||||||||
Sbjct: 4 catgtttttccacagctttcttgaacttct 33
>RF00648;MIR396;ABIM01011222.1/17767-17925 3649:Carica papaya
(papaya)
Length = 159
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 14 catgttattccacagctttcttgaacttct 43
|||||| |||||||||||||||||||||||
Sbjct: 4 catgtttttccacagctttcttgaacttct 33
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 102 agaagttcaagaaagccgtggaaaagcatgac 133
|||||||||||||||| |||||||| ||||||
Sbjct: 33 agaagttcaagaaagctgtggaaaaacatgac 2
>RF00648;MIR396;CAAP02000554.1/84783-84895 29760:Vitis vinifera
Length = 113
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 105 agttcaagaaagccgtggaaaagcatgaca 134
||||||||||||| ||||||||||||||||
Sbjct: 30 agttcaagaaagctgtggaaaagcatgaca 1
>RF00648;MIR396;AM489352.2/13768-13664 29760:Vitis vinifera
Length = 105
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 102 agaagttcaagaaagccgtggaaaagcatg 131
|||||||||||||||| |||||||||||||
Sbjct: 33 agaagttcaagaaagctgtggaaaagcatg 4
Score = 50.1 bits (25), Expect = 8e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 11 tgccatgttattccacagctttcttgaacttct 43
||||||| | |||||||||||||||||||||||
Sbjct: 1 tgccatgcttttccacagctttcttgaacttct 33
>RF00648;MIR396;AP008208.1/34306506-34306365 39947:Oryza sativa
Japonica Group
Length = 142
Score = 50.1 bits (25), Expect = 8e-06
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 99 aagagaagttcaagaaagccgtggaaaagcatg 131
||||||||||||||||||| ||||||| |||||
Sbjct: 36 aagagaagttcaagaaagctgtggaaaggcatg 4
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaacttct 43
|||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaacttct 33
>RF00648;MIR396;ABXC01002982.1/36897-37040 4558:Sorghum bicolor
(sorghum)
Length = 144
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 101 gagaagttcaagaaagccgtggaaaagcatg 131
||||||||||||||||| ||||||| |||||
Sbjct: 34 gagaagttcaagaaagctgtggaaaggcatg 4
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaacttct 43
|||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaacttct 33
>RF00648;MIR396;FJ085642.1/369-262 3352:Pinus taeda (loblolly pine)
Length = 108
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 104 aagttcaagaaagccgtggaaaagcatgaca 134
|||||||||||||| ||||||||| ||||||
Sbjct: 31 aagttcaagaaagctgtggaaaagtatgaca 1
>RF00648;MIR396;FM164183.1/100-235 3702:Arabidopsis thaliana (thale
cress)
Length = 136
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 104 aagttcaagaaagccgtggaaaagcatgac 133
|||||||||||||| ||||||||| |||||
Sbjct: 31 aagttcaagaaagctgtggaaaagtatgac 2
>RF00648;MIR396;AARH01003151.1/856908-856779 3694:Populus
trichocarpa
Length = 130
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 105 agttcaagaaagccgtggaaaa 126
||||||||||||||||||||||
Sbjct: 30 agttcaagaaagccgtggaaaa 9
