miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00445;mir-399;ABXC01004408.1/291013-291114 4558:Sorghum bicolor
(sorghum)
Length = 102
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 97 gccaaaggagagttgccctgtaac 120
||||||||||||||||||||||||
Sbjct: 73 gccaaaggagagttgccctgtaac 96
>RF00445;mir-399;BABK01105304.1/403-505 34305:Lotus japonicus
Length = 103
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 91 taactcgccaaaggagagttgccctgt 117
||||| |||||||||||||||||||||
Sbjct: 68 taacttgccaaaggagagttgccctgt 94
>RF00445;mir-399;DQ063659.1/70-185 3702:Arabidopsis thaliana (thale
cress)
Length = 116
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 97 gccaaaggagagttgccctgtaactg 122
||||||||||||||||||||| ||||
Sbjct: 86 gccaaaggagagttgccctgtcactg 111
>RF00445;mir-399;CAAP02003948.1/3813-3690 29760:Vitis vinifera
Length = 124
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tagttgtagggcttctctcctt 36
||||||||||||||||||||||
Sbjct: 5 tagttgtagggcttctctcctt 26
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 96 cgccaaaggagagttgccctgt 117
||||||||||||||||||||||
Sbjct: 94 cgccaaaggagagttgccctgt 115
