miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00445;mir-399;CAAP02003005.1/34979-35094 29760:Vitis vinifera
Length = 116
Score = 81.8 bits (41), Expect = 2e-15
Identities = 47/49 (95%)
Strand = Plus / Plus
Query: 75 cattcatgtggtgtgccctctgccaaaggagatttgcccggcaattctt 123
||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 66 cattcttgtagtgtgccctctgccaaaggagatttgcccggcaattctt 114
>RF00445;mir-399;AARH01004856.1/135040-135154 3694:Populus
trichocarpa
Length = 115
Score = 61.9 bits (31), Expect = 2e-09
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 14 tgcattacagggcaagatttccattggcaggcagccact 52
||||||||||||||||| ||||||||||||||||||||
Sbjct: 4 tgcattacagggcaagacctccattggcaggcagccact 42
Score = 61.9 bits (31), Expect = 2e-09
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 85 gtgtgccctctgccaaaggagatttgcccggcaattctt 123
|||||||||||||||||||||||||| ||||||| ||||
Sbjct: 75 gtgtgccctctgccaaaggagatttgtccggcaaatctt 113
>RF00445;mir-399;AASG02004610.1/3240-3121 3988:Ricinus communis
(castor bean)
Length = 120
Score = 61.9 bits (31), Expect = 2e-09
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 85 gtgtgccctctgccaaaggagatttgcccggcaattctt 123
||||||| ||||||||||||||||||||| |||||||||
Sbjct: 80 gtgtgccttctgccaaaggagatttgcccagcaattctt 118
>RF00445;mir-399;ABIM01002717.1/16187-16280 3649:Carica papaya
(papaya)
Length = 94
Score = 60.0 bits (30), Expect = 8e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 94 ctgccaaaggagatttgcccggcaattctt 123
||||||||||||||||||||||||||||||
Sbjct: 63 ctgccaaaggagatttgcccggcaattctt 92
>RF00445;mir-399;AC004481.3/15484-15601 3702:Arabidopsis thaliana
(thale cress)
Length = 118
Score = 60.0 bits (30), Expect = 8e-09
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 81 tgtggtgtgccctctgccaaaggagatttgcccggcaattct 122
||||||| || |||||||||||||||||||||||| ||||||
Sbjct: 74 tgtggtgagctctctgccaaaggagatttgcccggtaattct 115
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 14 tgcattacagggcaagatttccattggcag 43
|||||||||||||||||| ||||||||||
Sbjct: 4 tgcattacagggcaagatcaccattggcag 33
>RF00445;mir-399;AARH01014738.1/2159-2280 3694:Populus trichocarpa
Length = 122
Score = 58.0 bits (29), Expect = 3e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 95 tgccaaaggagatttgcccggcaattctt 123
|||||||||||||||||||||||||||||
Sbjct: 92 tgccaaaggagatttgcccggcaattctt 120
Score = 46.1 bits (23), Expect = 1e-04
Identities = 36/39 (92%), Gaps = 1/39 (2%)
Strand = Plus / Plus
Query: 14 tgcattacagggcaagatttccattggcaggcagccact 52
|||||||||||||||| || ||||||||| |||||||||
Sbjct: 4 tgcattacagggcaagctt-ccattggcatgcagccact 41
>RF00445;mir-399;ABIM01002717.1/22515-22407 3649:Carica papaya
(papaya)
Length = 109
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 94 ctgccaaaggagatttgcccggcaattc 121
||||||||||||||||||||||||||||
Sbjct: 78 ctgccaaaggagatttgcccggcaattc 105
>RF00445;mir-399;AC004481.3/13564-13465 3702:Arabidopsis thaliana
(thale cress)
Length = 100
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 92 ctctgccaaaggagatttgcccggcaattc 121
|||||||||||||||||||||| |||||||
Sbjct: 67 ctctgccaaaggagatttgccccgcaattc 96
>RF00445;mir-399;AARH01004856.1/144755-144865 3694:Populus
trichocarpa
Length = 111
Score = 50.1 bits (25), Expect = 8e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 95 tgccaaaggagatttgcccggcaattctt 123
|||||||| ||||||||||||||||||||
Sbjct: 81 tgccaaagaagatttgcccggcaattctt 109
>RF00445;mir-399;AC160628.37/88700-88815 3880:Medicago truncatula
(barrel medic)
Length = 116
Score = 50.1 bits (25), Expect = 8e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 94 ctgccaaaggagatttgcccggcaattct 122
|||||||||||||||||||| ||||||||
Sbjct: 85 ctgccaaaggagatttgcccagcaattct 113
>RF00445;mir-399;EU626442.1/66161-66296 29730:Gossypium raimondii
Length = 136
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 94 ctgccaaaggagatttgcccggcaattc 121
|||||||||||||||||||| |||||||
Sbjct: 105 ctgccaaaggagatttgccccgcaattc 132
>RF00445;mir-399;AY632360.1/45897-46033 3635:Gossypium hirsutum
(upland cotton)
Length = 137
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 94 ctgccaaaggagatttgcccggcaattc 121
|||||||||||||||||||| |||||||
Sbjct: 106 ctgccaaaggagatttgccccgcaattc 133
>RF00445;mir-399;AY632359.1/44840-44976 3635:Gossypium hirsutum
(upland cotton)
Length = 137
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 94 ctgccaaaggagatttgcccggcaattc 121
|||||||||||||||||||| |||||||
Sbjct: 106 ctgccaaaggagatttgccccgcaattc 133
>RF00445;mir-399;EU626443.1/56309-56427 47615:Gossypioides kirkii
Length = 119
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 94 ctgccaaaggagatttgcccggcaattc 121
|||||||||||||||||||| |||||||
Sbjct: 88 ctgccaaaggagatttgccccgcaattc 115
>RF00445;mir-399;AARH01002119.1/17334-17454 3694:Populus trichocarpa
Length = 121
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 94 ctgccaaaggagatttgcccggcaattc 121
|||||||||||||||||||| |||||||
Sbjct: 90 ctgccaaaggagatttgccccgcaattc 117
>RF00445;mir-399;AASG02001979.1/7364-7257 3988:Ricinus communis
(castor bean)
Length = 108
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 94 ctgccaaaggagatttgcccggcaattc 121
|||||||||||||||||||| |||||||
Sbjct: 77 ctgccaaaggagatttgccccgcaattc 104
>RF00445;mir-399;ABXC01006771.1/34940-34840 4558:Sorghum bicolor
(sorghum)
Length = 101
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 92 ctctgccaaaggagatttgcccggcaat 119
|||||||||||||||||||||| |||||
Sbjct: 68 ctctgccaaaggagatttgcccagcaat 95
>RF00445;mir-399;AP008212.1/20540927-20540811 39947:Oryza sativa
Japonica Group
Length = 117
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 92 ctctgccaaaggagatttgcccggcaat 119
|||||||||||||||||||||| |||||
Sbjct: 84 ctctgccaaaggagatttgcccagcaat 111
>RF00445;mir-399;AC021043.4/36317-36195 3702:Arabidopsis thaliana
(thale cress)
Length = 123
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 93 tctgccaaaggagatttgcccggcaattctt 123
||||||||||||||||||||| | |||||||
Sbjct: 91 tctgccaaaggagatttgccctgtaattctt 121
>RF00445;mir-399;ABIM01002716.1/17825-17941 3649:Carica papaya
(papaya)
Length = 117
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 94 ctgccaaaggagatttgcccggcaattctt 123
|||||||||||||||||||| | |||||||
Sbjct: 86 ctgccaaaggagatttgcccagtaattctt 115
>RF00445;mir-399;AC004481.3/13991-14099 3702:Arabidopsis thaliana
(thale cress)
Length = 109
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 91 cctctgccaaaggagatttgcc 112
||||||||||||||||||||||
Sbjct: 75 cctctgccaaaggagatttgcc 96
>RF00445;mir-399;AASG02001979.1/23540-23433 3988:Ricinus communis
(castor bean)
Length = 108
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 95 tgccaaaggagatttgcccggc 116
||||||||||||||||||||||
Sbjct: 78 tgccaaaggagatttgcccggc 99
>RF00445;mir-399;AASG02004610.1/1319-1202 3988:Ricinus communis
(castor bean)
Length = 118
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 94 ctgccaaaggagatttgcccggcaat 119
||||||| ||||||||||||||||||
Sbjct: 87 ctgccaagggagatttgcccggcaat 112
>RF00445;mir-399;AASG02004610.1/4629-4514 3988:Ricinus communis
(castor bean)
Length = 116
Score = 44.1 bits (22), Expect = 5e-04
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 11 aactgcattacagggcaagatttccattggcaggcagccacttata 56
||||||||||| ||||| || | |||||||||||||||| |||||
Sbjct: 1 aactgcattactgggcagaatctgcattggcaggcagccatttata 46
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 94 ctgccaaaggagatttgcccggcaattctt 123
||||||| || |||||||||||||||||||
Sbjct: 85 ctgccaatggggatttgcccggcaattctt 114
>RF00445;mir-399;AC160628.37/72380-72494 3880:Medicago truncatula
(barrel medic)
Length = 115
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 93 tctgccaaaggagatttgcccggcaattct 122
||||||||||||||||||||| || |||||
Sbjct: 83 tctgccaaaggagatttgcccagcgattct 112
>RF00445;mir-399;ABXC01004408.1/291013-291114 4558:Sorghum bicolor
(sorghum)
Length = 102
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 88 tgccctctgccaaaggagatttgccc 113
||||||||||||||||||| ||||||
Sbjct: 65 tgccctctgccaaaggagagttgccc 90
>RF00445;mir-399;ABXC01006255.1/20311-20417 4558:Sorghum bicolor
(sorghum)
Length = 107
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 94 ctgccaaaggagatttgcccggcaat 119
|||||||||||||||||||| |||||
Sbjct: 76 ctgccaaaggagatttgcccagcaat 101
>RF00445;mir-399;AP008207.1/30470987-30470870 39947:Oryza sativa
Japonica Group
Length = 118
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 94 ctgccaaaggagatttgcccggcaat 119
|||||||||||||||||||| |||||
Sbjct: 87 ctgccaaaggagatttgcccagcaat 112
