miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00445;mir-399;AP008212.1/20540927-20540811 39947:Oryza sativa
Japonica Group
Length = 117
Score = 54.0 bits (27), Expect = 5e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 91 ttgtgctctctgccaatggagatttgcccagcaat 125
|||| ||||||||||| ||||||||||||||||||
Sbjct: 77 ttgttctctctgccaaaggagatttgcccagcaat 111
>RF00445;mir-399;AASG02004610.1/3240-3121 3988:Ricinus communis
(castor bean)
Length = 120
Score = 50.1 bits (25), Expect = 8e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 99 tctgccaatggagatttgcccagcaattc 127
|||||||| ||||||||||||||||||||
Sbjct: 88 tctgccaaaggagatttgcccagcaattc 116
Score = 44.1 bits (22), Expect = 5e-04
Identities = 40/45 (88%), Gaps = 2/45 (4%)
Strand = Plus / Plus
Query: 11 agttgcattacagggcaa--atcttcactggcaggcagccacttt 53
|||||||||||||||||| |||| || ||||||| |||||||||
Sbjct: 1 agttgcattacagggcaaatatctccattggcaggtagccacttt 45
>RF00445;mir-399;AC160628.37/88700-88815 3880:Medicago truncatula
(barrel medic)
Length = 116
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 100 ctgccaatggagatttgcccagcaattc 127
||||||| ||||||||||||||||||||
Sbjct: 85 ctgccaaaggagatttgcccagcaattc 112
>RF00445;mir-399;CAAP02003005.1/34979-35094 29760:Vitis vinifera
Length = 116
Score = 48.1 bits (24), Expect = 3e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 92 tgtgctctctgccaatggagatttgcccagcaattc 127
||||| ||||||||| |||||||||||| |||||||
Sbjct: 77 tgtgccctctgccaaaggagatttgcccggcaattc 112
>RF00445;mir-399;ABXC01006771.1/34940-34840 4558:Sorghum bicolor
(sorghum)
Length = 101
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 98 ctctgccaatggagatttgcccagcaat 125
||||||||| ||||||||||||||||||
Sbjct: 68 ctctgccaaaggagatttgcccagcaat 95
>RF00445;mir-399;AC004481.3/13564-13465 3702:Arabidopsis thaliana
(thale cress)
Length = 100
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 97 tctctgccaatggagatttgcccagcaattc 127
|||||||||| |||||||||||| |||||||
Sbjct: 66 tctctgccaaaggagatttgccccgcaattc 96
>RF00445;mir-399;EU626442.1/60145-60273 29730:Gossypium raimondii
Length = 129
Score = 44.1 bits (22), Expect = 5e-04
Identities = 32/34 (94%), Gaps = 1/34 (2%)
Strand = Plus / Plus
Query: 17 attacagggcaaa-tcttcactggcaggcagcca 49
||||||||||||| |||||| |||||||||||||
Sbjct: 8 attacagggcaaaatcttcagtggcaggcagcca 41
>RF00445;mir-399;EU626443.1/54050-54178 47615:Gossypioides kirkii
Length = 129
Score = 44.1 bits (22), Expect = 5e-04
Identities = 32/34 (94%), Gaps = 1/34 (2%)
Strand = Plus / Plus
Query: 17 attacagggcaaa-tcttcactggcaggcagcca 49
||||||||||||| |||||| |||||||||||||
Sbjct: 8 attacagggcaaaatcttcagtggcaggcagcca 41
>RF00445;mir-399;ABIM01002717.1/22515-22407 3649:Carica papaya
(papaya)
Length = 109
Score = 44.1 bits (22), Expect = 5e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 94 tgctctctgccaatggagatttgcccagcaattc 127
||||| ||||||| |||||||||||| |||||||
Sbjct: 72 tgctcactgccaaaggagatttgcccggcaattc 105
>RF00445;mir-399;AARH01004856.1/135040-135154 3694:Populus
trichocarpa
Length = 115
Score = 44.1 bits (22), Expect = 5e-04
Identities = 38/42 (90%), Gaps = 1/42 (2%)
Strand = Plus / Plus
Query: 11 agttgcattacagggcaa-atcttcactggcaggcagccact 51
|||||||||||||||||| | || || |||||||||||||||
Sbjct: 1 agttgcattacagggcaagacctccattggcaggcagccact 42
>RF00445;mir-399;ABXC01006255.1/20311-20417 4558:Sorghum bicolor
(sorghum)
Length = 107
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 100 ctgccaatggagatttgcccagcaat 125
||||||| ||||||||||||||||||
Sbjct: 76 ctgccaaaggagatttgcccagcaat 101
>RF00445;mir-399;AP008207.1/30470987-30470870 39947:Oryza sativa
Japonica Group
Length = 118
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 100 ctgccaatggagatttgcccagcaat 125
||||||| ||||||||||||||||||
Sbjct: 87 ctgccaaaggagatttgcccagcaat 112
