miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00445;mir-399;AARH01002114.1/15624-15718 3694:Populus trichocarpa
Length = 95
Score = 60.0 bits (30), Expect = 7e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 78 gccaaaggagaattgccctgccattcaact 107
||||||||||||||||||||||||||||||
Sbjct: 66 gccaaaggagaattgccctgccattcaact 95
>RF00445;mir-399;AAAA02019779.1/19949-19837 39946:Oryza sativa
Indica Group
Length = 113
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 78 gccaaaggagaattgccctgccattca 104
|||||||||||||||||||||||||||
Sbjct: 84 gccaaaggagaattgccctgccattca 110
>RF00445;mir-399;AACV01003693.1/42206-42110 39947:Oryza sativa
Japonica Group
Length = 97
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 78 gccaaaggagaattgccctgccattca 104
|||||||||||||||||||||||||||
Sbjct: 68 gccaaaggagaattgccctgccattca 94
>RF00445;mir-399;ABIM01002717.1/30662-30788 3649:Carica papaya
(papaya)
Length = 127
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 78 gccaaaggagaattgccctgccattc 103
||||||||||||||||||||||||||
Sbjct: 98 gccaaaggagaattgccctgccattc 123
>RF00445;mir-399;AARH01002119.1/15983-15882 3694:Populus trichocarpa
Length = 102
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 78 gccaaaggagaattgccctgccattc 103
||||||||||||||||||||||||||
Sbjct: 73 gccaaaggagaattgccctgccattc 98
>RF00445;mir-399;AM467681.2/18299-18208 29760:Vitis vinifera
Length = 92
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 78 gccaaaggagaattgccctgccattc 103
||||||||||||||||||||||||||
Sbjct: 63 gccaaaggagaattgccctgccattc 88
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 13 gaataacagcgcaattctcctttggcagaaa 43
||||||||| ||||| |||||||||||||||
Sbjct: 5 gaataacagtgcaatcctcctttggcagaaa 35
>RF00445;mir-399;ABXC01002522.1/3232-3121 4558:Sorghum bicolor
(sorghum)
Length = 112
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 78 gccaaaggagaattgccctgccattc 103
||||||||||||||||||||||||||
Sbjct: 83 gccaaaggagaattgccctgccattc 108
>RF00445;mir-399;ABXC01006771.1/37202-37314 4558:Sorghum bicolor
(sorghum)
Length = 113
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 78 gccaaaggagaattgccctgccattc 103
||||||||||||||||||||||||||
Sbjct: 84 gccaaaggagaattgccctgccattc 109
>RF00445;mir-399;AM467681.2/12374-12276 29760:Vitis vinifera
Length = 99
Score = 50.1 bits (25), Expect = 7e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 13 gaataacagcgcaattctcctttggcaga 41
||||||||| |||||||||||||||||||
Sbjct: 95 gaataacagggcaattctcctttggcaga 67
>RF00445;mir-399;AASG02001979.1/21180-21275 3988:Ricinus communis
(castor bean)
Length = 96
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 13 gaataacagcgcaattctcctttggcag 40
||||||||| ||||||||||||||||||
Sbjct: 92 gaataacagggcaattctcctttggcag 65
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 78 gccaaaggagaattgccctgccattcaact 107
|||||||||||||||||||| ||||||||
Sbjct: 67 gccaaaggagaattgccctgttattcaact 96
>RF00445;mir-399;EU626443.1/55199-55104 47615:Gossypioides kirkii
Length = 96
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 78 gccaaaggagaattgccctgccattca 104
||||||||||| |||||||||||||||
Sbjct: 67 gccaaaggagatttgccctgccattca 93
>RF00445;mir-399;AAAA02017707.1/12909-13018 39946:Oryza sativa
Indica Group
Length = 110
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 78 gccaaaggagaattgccctgccattca 104
||||||||||||||||||||| |||||
Sbjct: 81 gccaaaggagaattgccctgcgattca 107
>RF00445;mir-399;ABXC01002232.1/126477-126594 4558:Sorghum bicolor
(sorghum)
Length = 118
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 78 gccaaaggagaattgccctgccattc 103
||||||||||||||||||||| ||||
Sbjct: 89 gccaaaggagaattgccctgcgattc 114
>RF00445;mir-399;ABXC01006255.1/18853-18743 4558:Sorghum bicolor
(sorghum)
Length = 111
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 78 gccaaaggagaattgccctgccattc 103
||||||||||||||||||||| ||||
Sbjct: 82 gccaaaggagaattgccctgcgattc 107
