miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00445;mir-399;EU626443.1/55199-55104 47615:Gossypioides kirkii
Length = 96
Score = 83.8 bits (42), Expect = 4e-16
Identities = 83/96 (86%), Gaps = 3/96 (3%)
Strand = Plus / Plus
Query: 9 tgaggaattacagagcaattctccttcagcacaaatgcttatgctccttcatag---ttc 65
||||||||||||||||| ||||||| |||| ||||| |||||||| | |||| |||
Sbjct: 1 tgaggaattacagagcatgtctcctttagcagaaatgtttatgctcttgcatatgaattc 60
Query: 66 tattttgccagaggagatttgccctgccattcactc 101
||||||||| |||||||||||||||||||||||||
Sbjct: 61 gattttgccaaaggagatttgccctgccattcactc 96
>RF00445;mir-399;AARH01002119.1/15983-15882 3694:Populus
trichocarpa
Length = 102
Score = 48.1 bits (24), Expect = 2e-05
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 58 catagttctattttgccagaggagatttgccctgccattc 97
|||| |||| |||||||| |||||| ||||||||||||||
Sbjct: 59 catatttctgttttgccaaaggagaattgccctgccattc 98
>RF00445;mir-399;AC160628.37/99250-99151 3880:Medicago truncatula
(barrel medic)
Length = 100
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 69 tttgccagaggagatttgccctgccatt 96
||||||| ||||||||||||||||||||
Sbjct: 68 tttgccaaaggagatttgccctgccatt 95
>RF00445;mir-399;AC160628.37/109895-109796 3880:Medicago
truncatula (barrel medic)
Length = 100
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 69 tttgccagaggagatttgccctgccatt 96
||||||| ||||||||||||||||||||
Sbjct: 68 tttgccaaaggagatttgccctgccatt 95
>RF00445;mir-399;AM467681.2/18299-18208 29760:Vitis vinifera
Length = 92
Score = 48.1 bits (24), Expect = 2e-05
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 58 catagttctattttgccagaggagatttgccctgccattc 97
|||| |||| |||||||| |||||| ||||||||||||||
Sbjct: 49 catacttctgttttgccaaaggagaattgccctgccattc 88
>RF00445;mir-399;AC160628.37/103972-103869 3880:Medicago
truncatula (barrel medic)
Length = 104
Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 63 ttctattttgccagaggagatttgccctgccatt 96
||||| ||||||| || |||||||||||||||||
Sbjct: 66 ttctagtttgccaaagaagatttgccctgccatt 99
