miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00445;mir-399;EU626442.1/66161-66296 29730:Gossypium raimondii
Length = 136
Score = 75.8 bits (38), Expect = 1e-13
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 70 agctcactgccaaaggagatttgccccgcaattcagcc 107
||||||||||||||||||||||||||||||||||||||
Sbjct: 99 agctcactgccaaaggagatttgccccgcaattcagcc 136
>RF00445;mir-399;AY632360.1/45897-46033 3635:Gossypium hirsutum
(upland cotton)
Length = 137
Score = 75.8 bits (38), Expect = 1e-13
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 70 agctcactgccaaaggagatttgccccgcaattcagcc 107
||||||||||||||||||||||||||||||||||||||
Sbjct: 100 agctcactgccaaaggagatttgccccgcaattcagcc 137
>RF00445;mir-399;AY632359.1/44840-44976 3635:Gossypium hirsutum
(upland cotton)
Length = 137
Score = 75.8 bits (38), Expect = 1e-13
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 70 agctcactgccaaaggagatttgccccgcaattcagcc 107
||||||||||||||||||||||||||||||||||||||
Sbjct: 100 agctcactgccaaaggagatttgccccgcaattcagcc 137
>RF00445;mir-399;EU626443.1/56309-56427 47615:Gossypioides kirkii
Length = 119
Score = 75.8 bits (38), Expect = 1e-13
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 70 agctcactgccaaaggagatttgccccgcaattcagcc 107
||||||||||||||||||||||||||||||||||||||
Sbjct: 82 agctcactgccaaaggagatttgccccgcaattcagcc 119
>RF00445;mir-399;AASG02001979.1/7364-7257 3988:Ricinus communis
(castor bean)
Length = 108
Score = 73.8 bits (37), Expect = 4e-13
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 68 taagctcactgccaaaggagatttgccccgcaattca 104
|||||||||||||||||||||||||||||||||||||
Sbjct: 69 taagctcactgccaaaggagatttgccccgcaattca 105
>RF00445;mir-399;AM467681.2/20491-20605 29760:Vitis vinifera
Length = 115
Score = 69.9 bits (35), Expect = 7e-12
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 68 taagctcactgccaaaggagatttgccccgcaattcagc 106
||||||||||||||||||||||||||||| |||||||||
Sbjct: 76 taagctcactgccaaaggagatttgcccctcaattcagc 114
>RF00445;mir-399;AARH01002119.1/17334-17454 3694:Populus trichocarpa
Length = 121
Score = 65.9 bits (33), Expect = 1e-10
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 68 taagctcactgccaaaggagatttgccccgcaattca 104
||||||| |||||||||||||||||||||||||||||
Sbjct: 82 taagctcgctgccaaaggagatttgccccgcaattca 118
>RF00445;mir-399;AM470981.2/5848-5733 29760:Vitis vinifera
Length = 116
Score = 65.9 bits (33), Expect = 1e-10
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 68 taagctcactgccaaaggagatttgccccgcaa 100
|||||||||||||||||||||||||||||||||
Sbjct: 77 taagctcactgccaaaggagatttgccccgcaa 109
>RF00445;mir-399;ABIM01002717.1/22515-22407 3649:Carica papaya
(papaya)
Length = 109
Score = 60.0 bits (30), Expect = 7e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 71 gctcactgccaaaggagatttgccccgcaattca 104
||||||||||||||||||||||||| ||||||||
Sbjct: 73 gctcactgccaaaggagatttgcccggcaattca 106
>RF00445;mir-399;AARH01002114.1/23429-23543 3694:Populus trichocarpa
Length = 115
Score = 60.0 bits (30), Expect = 7e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 71 gctcactgccaaaggagatttgccccgcaattca 104
|||||||||||||| |||||||||||||||||||
Sbjct: 79 gctcactgccaaagaagatttgccccgcaattca 112
>RF00445;mir-399;AC004481.3/13564-13465 3702:Arabidopsis thaliana
(thale cress)
Length = 100
Score = 58.0 bits (29), Expect = 3e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 76 ctgccaaaggagatttgccccgcaattca 104
|||||||||||||||||||||||||||||
Sbjct: 69 ctgccaaaggagatttgccccgcaattca 97
>RF00445;mir-399;AARH01014736.1/14382-14268 3694:Populus trichocarpa
Length = 115
Score = 58.0 bits (29), Expect = 3e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 71 gctcactgccaaaggagatttgccccgcaattc 103
|||||||||||||| ||||||||||||||||||
Sbjct: 79 gctcactgccaaagaagatttgccccgcaattc 111
>RF00445;mir-399;AASG02001979.1/11398-11282 3988:Ricinus communis
(castor bean)
Length = 117
Score = 58.0 bits (29), Expect = 3e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 72 ctcactgccaaaggagatttgccccgcaattca 104
||||||||||||| |||||||||||||||||||
Sbjct: 82 ctcactgccaaagaagatttgccccgcaattca 114
>RF00445;mir-399;AC160628.37/100813-100915 3880:Medicago truncatula
(barrel medic)
Length = 103
Score = 50.1 bits (25), Expect = 7e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 72 ctcactgccaaaggagatttgccccgcaattca 104
||||| ||||||| |||||||||||||||||||
Sbjct: 68 ctcaccgccaaagaagatttgccccgcaattca 100
>RF00445;mir-399;ABIM01002717.1/16187-16280 3649:Carica papaya
(papaya)
Length = 94
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 76 ctgccaaaggagatttgccccgcaattc 103
|||||||||||||||||||| |||||||
Sbjct: 63 ctgccaaaggagatttgcccggcaattc 90
>RF00445;mir-399;AASG02004610.1/3240-3121 3988:Ricinus communis
(castor bean)
Length = 120
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 76 ctgccaaaggagatttgccccgcaattc 103
|||||||||||||||||||| |||||||
Sbjct: 89 ctgccaaaggagatttgcccagcaattc 116
>RF00445;mir-399;AC160628.37/88700-88815 3880:Medicago truncatula
(barrel medic)
Length = 116
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 76 ctgccaaaggagatttgccccgcaattc 103
|||||||||||||||||||| |||||||
Sbjct: 85 ctgccaaaggagatttgcccagcaattc 112
>RF00445;mir-399;CAAP02003005.1/34979-35094 29760:Vitis vinifera
Length = 116
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 76 ctgccaaaggagatttgccccgcaattc 103
|||||||||||||||||||| |||||||
Sbjct: 85 ctgccaaaggagatttgcccggcaattc 112
>RF00445;mir-399;ABXC01006255.1/20311-20417 4558:Sorghum bicolor
(sorghum)
Length = 107
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 74 cactgccaaaggagatttgccccgcaat 101
|||||||||||||||||||||| |||||
Sbjct: 74 cactgccaaaggagatttgcccagcaat 101
>RF00445;mir-399;AC021043.4/36317-36195 3702:Arabidopsis thaliana
(thale cress)
Length = 123
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 17 attacagggcaaatctcctttgg 39
|||||||||||||||||||||||
Sbjct: 117 attacagggcaaatctcctttgg 95
>RF00445;mir-399;AARH01014738.1/2159-2280 3694:Populus trichocarpa
Length = 122
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 77 tgccaaaggagatttgccccgcaattc 103
||||||||||||||||||| |||||||
Sbjct: 92 tgccaaaggagatttgcccggcaattc 118
>RF00445;mir-399;AC004481.3/13991-14099 3702:Arabidopsis thaliana
(thale cress)
Length = 109
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 76 ctgccaaaggagatttgccccgcaat 101
||||||||||||||||||| ||||||
Sbjct: 78 ctgccaaaggagatttgcctcgcaat 103
>RF00445;mir-399;AC004481.3/15484-15601 3702:Arabidopsis thaliana
(thale cress)
Length = 118
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 70 agctcactgccaaaggagatttgccc 95
||||| ||||||||||||||||||||
Sbjct: 81 agctctctgccaaaggagatttgccc 106
>RF00445;mir-399;ABXC01006771.1/34940-34840 4558:Sorghum bicolor
(sorghum)
Length = 101
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 76 ctgccaaaggagatttgccccgcaat 101
|||||||||||||||||||| |||||
Sbjct: 70 ctgccaaaggagatttgcccagcaat 95
>RF00445;mir-399;ABXC01006255.1/24747-24852 4558:Sorghum bicolor
(sorghum)
Length = 106
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 75 actgccaaaggagatttgccccgcaattca 104
|||||||||||| |||||||||| ||||||
Sbjct: 74 actgccaaaggaaatttgccccggaattca 103
>RF00445;mir-399;AC111015.2/21804-21909 39947:Oryza sativa Japonica
Group
Length = 106
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 75 actgccaaaggagatttgccccgcaattca 104
|||||||||||| |||||||||| ||||||
Sbjct: 74 actgccaaaggaaatttgccccggaattca 103
>RF00445;mir-399;AP008212.1/20540927-20540811 39947:Oryza sativa
Japonica Group
Length = 117
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 76 ctgccaaaggagatttgccccgcaat 101
|||||||||||||||||||| |||||
Sbjct: 86 ctgccaaaggagatttgcccagcaat 111
>RF00445;mir-399;AP008207.1/30470987-30470870 39947:Oryza sativa
Japonica Group
Length = 118
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 76 ctgccaaaggagatttgccccgcaat 101
|||||||||||||||||||| |||||
Sbjct: 87 ctgccaaaggagatttgcccagcaat 112
