miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00842;MIR403;AASG02004953.1/3036-2929 3988:Ricinus communis
(castor bean)
Length = 108
Score = 73.8 bits (37), Expect = 5e-13
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 77 atggtgttagattcacgcacaaactcgtgatctgtct 113
|||||||||||||||||||||||||||||||||||||
Sbjct: 72 atggtgttagattcacgcacaaactcgtgatctgtct 108
>RF00842;MIR403;AASG02008767.1/6368-6472 3988:Ricinus communis
(castor bean)
Length = 105
Score = 65.9 bits (33), Expect = 1e-10
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 77 atggtgttagattcacgcacaaactcgtgatct 109
|||||||||||||||||||||||||||||||||
Sbjct: 69 atggtgttagattcacgcacaaactcgtgatct 101
>RF00842;MIR403;CAAP02000014.1/37272-37187 29760:Vitis vinifera
Length = 86
Score = 61.9 bits (31), Expect = 2e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 79 ggtgttagattcacgcacaaactcgtgatctgtct 113
||||||||||||||||||||||||| |||||||||
Sbjct: 52 ggtgttagattcacgcacaaactcgggatctgtct 86
>RF00842;MIR403;CAAP02002017.1/13776-13691 29760:Vitis vinifera
Length = 86
Score = 61.9 bits (31), Expect = 2e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 79 ggtgttagattcacgcacaaactcgtgatctgtct 113
||||||||||||||||||||||||| |||||||||
Sbjct: 52 ggtgttagattcacgcacaaactcgggatctgtct 86
>RF00842;MIR403;AARH01004350.1/142675-142577 3694:Populus
trichocarpa
Length = 99
Score = 58.0 bits (29), Expect = 3e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 77 atggtgttagattcacgcacaaactcgtgatctgtct 113
|||| |||||||||||||||||||||| |||||||||
Sbjct: 63 atggcgttagattcacgcacaaactcgcgatctgtct 99
>RF00842;MIR403;CAAP02000653.1/14609-14502 29760:Vitis vinifera
Length = 108
Score = 58.0 bits (29), Expect = 3e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 77 atggtgttagattcacgcacaaactcgtgatctgtct 113
||||| |||||||||||||||||||||| ||||||||
Sbjct: 72 atggtcttagattcacgcacaaactcgtaatctgtct 108
>RF00842;MIR403;AC189416.2/88220-88122 51351:Brassica rapa subsp.
pekinensis
Length = 99
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 83 ttagattcacgcacaaactcgtgatctgtct 113
|||||||||||||||||||||| ||||||||
Sbjct: 69 ttagattcacgcacaaactcgtaatctgtct 99
>RF00842;MIR403;EU549672.1/167-284 3702:Arabidopsis thaliana (thale
cress)
Length = 118
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 83 ttagattcacgcacaaactcgtgatctgtct 113
|||||||||||||||||||||| ||||||||
Sbjct: 88 ttagattcacgcacaaactcgtaatctgtct 118
>RF00842;MIR403;AARH01001226.1/54332-54202 3694:Populus trichocarpa
Length = 131
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 83 ttagattcacgcacaaactcgtgatctgtct 113
|||||||||||||||||||||| ||||||||
Sbjct: 101 ttagattcacgcacaaactcgtaatctgtct 131
>RF00842;MIR403;AM431810.2/2208-2094 29760:Vitis vinifera
Length = 115
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 82 gttagattcacgcacaaactcgtgatc 108
|||||||||||||||||||||||||||
Sbjct: 84 gttagattcacgcacaaactcgtgatc 110
>RF00842;MIR403;ABIM01005602.1/13538-13393 3649:Carica papaya
(papaya)
Length = 146
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 84 tagattcacgcacaaactcgtgatctgtct 113
||||||||||||||||||||| ||||||||
Sbjct: 117 tagattcacgcacaaactcgtaatctgtct 146
