miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01005;MIR530;CAAP02000018.1/279657-279483 29760:Vitis vinifera
Length = 175
Score = 54.0 bits (27), Expect = 6e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 13 catttatctgcatttgcacctgcacct 39
|||||||||||||||||||||||||||
Sbjct: 9 catttatctgcatttgcacctgcacct 35
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 120 gagaggtgcagatgcaggtgcagacaaatg 149
||||||||||| ||||| ||||||||||||
Sbjct: 136 gagaggtgcagctgcagttgcagacaaatg 165
>RF01005;MIR530;CAAP02000071.1/181669-181513 29760:Vitis vinifera
Length = 157
Score = 54.0 bits (27), Expect = 6e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 119 ggagaggtgcagatgcaggtgcagacaaatggcctcttg 157
||||||||| ||||||| ||||||||||||||| |||||
Sbjct: 117 ggagaggtgtagatgcaagtgcagacaaatggcatcttg 155
>RF01005;MIR530;ABIM01000670.1/18536-18381 3649:Carica papaya
(papaya)
Length = 156
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 tttatctgcatttgcacctgcacct 39
|||||||||||||||||||||||||
Sbjct: 15 tttatctgcatttgcacctgcacct 39
>RF01005;MIR530;AARH01003925.1/6653-6796 3694:Populus trichocarpa
Length = 144
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 tttatctgcatttgcacctgcacct 39
|||||||||||||||||||||||||
Sbjct: 15 tttatctgcatttgcacctgcacct 39
>RF01005;MIR530;AASG02002502.1/29848-29672 3988:Ricinus communis
(castor bean)
Length = 177
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 tttatctgcatttgcacctgcacct 39
|||||||||||||||||||||||||
Sbjct: 15 tttatctgcatttgcacctgcacct 39
>RF01005;MIR530;AASG02012391.1/1028-920 3988:Ricinus communis
(castor bean)
Length = 109
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 13 catttatctgcatttgcacctgcac 37
|||||||||||||||||||||||||
Sbjct: 14 catttatctgcatttgcacctgcac 38
>RF01005;MIR530;CAAP02000356.1/124211-124051 29760:Vitis vinifera
Length = 161
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 tttatctgcatttgcacctgcacct 39
|||||||||||||||||||||||||
Sbjct: 15 tttatctgcatttgcacctgcacct 39
>RF01005;MIR530;ABIM01045376.1/876-1006 3649:Carica papaya
(papaya)
Length = 131
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 13 catttatctgcatttgcacctgcacct 39
|||||||||||||||| ||||||||||
Sbjct: 15 catttatctgcatttgtacctgcacct 41
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 123 aggtgcagatgcaggtgcagacaaatg 149
|||||||||||||| ||||||||||||
Sbjct: 95 aggtgcagatgcagatgcagacaaatg 121
>RF01005;MIR530;BABK01011395.1/470-304 34305:Lotus japonicus
Length = 167
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 tttatctgcatttgcacctgcac 37
|||||||||||||||||||||||
Sbjct: 14 tttatctgcatttgcacctgcac 36
>RF01005;MIR530;BABK01011395.1/314-467 34305:Lotus japonicus
Length = 154
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 15 tttatctgcatttgcacctgcac 37
|||||||||||||||||||||||
Sbjct: 144 tttatctgcatttgcacctgcac 122
>RF01005;MIR530;AM473995.2/8334-8489 29760:Vitis vinifera
Length = 156
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 13 catttatctgcatttgcacctgcacct 39
||||||||||||||||||| |||||||
Sbjct: 19 catttatctgcatttgcacttgcacct 45
Score = 46.1 bits (23), Expect = 1e-04
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 125 gtgcagatgcaggtgcagacaaatggcctcttg 157
|||| |||| ||||||||||||||||| |||||
Sbjct: 122 gtgcrgatgtaggtgcagacaaatggcatcttg 154
>RF01005;MIR530;CAAP02002388.1/48571-48426 29760:Vitis vinifera
Length = 146
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 13 catttatctgcatttgcacctgcacct 39
|||||||||||||||| ||||||||||
Sbjct: 12 catttatctgcatttgtacctgcacct 38
>RF01005;MIR530;AC182714.2/17566-17395 3694:Populus trichocarpa
Length = 172
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tttatctgcatttgcacctgca 36
||||||||||||||||||||||
Sbjct: 15 tttatctgcatttgcacctgca 36
