miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00714;MIR535;AASG02028037.1/959-864 3988:Ricinus communis
(castor bean)
Length = 96
Score = 56.0 bits (28), Expect = 1e-07
Identities = 68/80 (85%), Gaps = 1/80 (1%)
Strand = Plus / Minus
Query: 21 tgacaacgatagagagcacgcttgtacacatccatgt-ccttgcaagaatgccaacgagc 79
|||||||||||| ||||||||| || || |||||| |||| || ||| || ||| |||
Sbjct: 89 tgacaacgatagggagcacgctggtgtgcaaccatgttccttacatgaaggctaacaagc 30
Query: 80 gtgctctctctcgttgtcaa 99
||||||||||||||||||||
Sbjct: 29 gtgctctctctcgttgtcaa 10
>RF00714;MIR535;ABIM01002931.1/4831-4931 3649:Carica papaya
(papaya)
Length = 101
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 77 agcgtgctctctctcgttgtca 98
||||||||||||||||||||||
Sbjct: 32 agcgtgctctctctcgttgtca 11
>RF00714;MIR535;CAAP02013010.1/2187-2087 29760:Vitis vinifera
Length = 101
Score = 44.1 bits (22), Expect = 4e-04
Identities = 62/74 (83%), Gaps = 1/74 (1%)
Strand = Plus / Minus
Query: 27 cgatagagagcacgcttgtacacatccatgt-ccttgcaagaatgccaacgagcgtgctc 85
||||||||||||||| |||| ||| ||||| ||| || |||||| || ||| |||||
Sbjct: 83 cgatagagagcacgcctgtaaacagtcatgttcctcacatgaatgctgacaagcatgctc 24
Query: 86 tctctcgttgtcaa 99
||||||||||||||
Sbjct: 23 tctctcgttgtcaa 10
>RF00714;MIR535;ABEU01009956.1/139970-139869 145481:Physcomitrella
patens subsp. patens
Length = 102
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 77 agcgtgctctctctcgttgtca 98
||||||||||||||||||||||
Sbjct: 32 agcgtgctctctctcgttgtca 11
>RF00714;MIR535;ABEU01004601.1/20377-20277 145481:Physcomitrella
patens subsp. patens
Length = 101
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 77 agcgtgctctctctcgttgtca 98
||||||||||||||||||||||
Sbjct: 32 agcgtgctctctctcgttgtca 11
>RF00714;MIR535;ABEU01006897.1/4394-4494 145481:Physcomitrella
patens subsp. patens
Length = 101
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 77 agcgtgctctctctcgttgtca 98
||||||||||||||||||||||
Sbjct: 32 agcgtgctctctctcgttgtca 11
