miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;AASG02012489.1/1166-1359 3988:Ricinus communis
(castor bean)
Length = 194
Score = 99.6 bits (50), Expect = 2e-20
Identities = 75/82 (91%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 6 aaggagtggagctccttgaagtccaaaagaggttctagcaagggtaaattgagctgctga 65
|||||||||||||||||||||||||| ||||| ||| | | ||||| |||||||||||||
Sbjct: 5 aaggagtggagctccttgaagtccaatagaggatcttg-atgggtagattgagctgctga 63
Query: 66 gctatggatcccacagtcctat 87
|||||||||||||||| |||||
Sbjct: 64 gctatggatcccacagccctat 85
Score = 56.0 bits (28), Expect = 2e-07
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 125 gataggcttgtggcttgcatatttctggaccttcattacc 164
|||||||||||||||||||||| || ||| ||||||||||
Sbjct: 106 gataggcttgtggcttgcatatctcaggagcttcattacc 145
>RF00638;MIR159;AARH01017144.1/4716-4901 3694:Populus trichocarpa
Length = 186
Score = 83.8 bits (42), Expect = 9e-16
Identities = 77/86 (89%), Gaps = 2/86 (2%)
Strand = Plus / Plus
Query: 8 ggagtggagctccttgaagtccaaaagaggttctagcaagggtaaattgagctgctgagc 67
|||||||||||||||||||||||| ||||||||| || ||||| ||| ||||||| |||
Sbjct: 7 ggagtggagctccttgaagtccaatagaggttcttgc-tgggtagattaagctgctaagc 65
Query: 68 tatggatcccacagtcctatgtatca 93
||||||| |||||||||||| |||||
Sbjct: 66 tatggat-ccacagtcctatctatca 90
>RF00638;MIR159;CAAP02007000.1/8870-9063 29760:Vitis vinifera
Length = 194
Score = 71.9 bits (36), Expect = 4e-12
Identities = 70/80 (87%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 8 ggagtggagctccttgaagtccaaaagaggttctagcaagggtaaattgagctgctgagc 67
|||||||||||||||||||||||| ||||| ||| | ||||| |||||||||||||
Sbjct: 7 ggagtggagctccttgaagtccaatagagggtcttac-tgggtagattgagctgctgact 65
Query: 68 tatggatcccacagtcctat 87
|||||||||||||| |||||
Sbjct: 66 tatggatcccacagccctat 85
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 125 gataggcttgtggcttgcatat 146
||||||||||||||||||||||
Sbjct: 106 gataggcttgtggcttgcatat 127
>RF00638;MIR159;AC235792.1/25881-25682 4081:Solanum lycopersicum
Length = 200
Score = 63.9 bits (32), Expect = 9e-10
Identities = 69/80 (86%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 8 ggagtggagctccttgaagtccaaaagaggttctagcaagggtaaattgagctgctgagc 67
|||||||||||||||||||||||| ||| | |||| | ||| || ||||||||||||| |
Sbjct: 7 ggagtggagctccttgaagtccaacagaagatctaac-aggttagattgagctgctgacc 65
Query: 68 tatggatcccacagtcctat 87
||||||| || ||| |||||
Sbjct: 66 tatggattcctcagccctat 85
>RF00638;MIR159;ABIM01001657.1/35314-35507 3649:Carica papaya
(papaya)
Length = 194
Score = 58.0 bits (29), Expect = 5e-08
Identities = 63/73 (86%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 14 gagctccttgaagtccaaaagaggttctagcaagggtaaattgagctgctgagctatgga 73
|||||||||||||||||| ||||| | | ||| |||| |||||||||| ||||||||||
Sbjct: 13 gagctccttgaagtccaatagaggattttgca-gggttgattgagctgccgagctatgga 71
Query: 74 tcccacagtccta 86
| |||||| ||||
Sbjct: 72 ttccacagcccta 84
>RF00638;MIR159;AY728395.1/6-170 3694:Populus trichocarpa
Length = 165
Score = 52.0 bits (26), Expect = 3e-06
Identities = 63/74 (85%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 14 gagctccttgaagtccaaaagaggttctagcaagggtaaattgagctgctgagctatgga 73
|||||||||||||||||| ||| | || || ||||| || |||||||||||||||| |
Sbjct: 1 gagctccttgaagtccaatagaagctcctgct-gggtagatcgagctgctgagctatgaa 59
Query: 74 tcccacagtcctat 87
|||||||| |||||
Sbjct: 60 tcccacagccctat 73
>RF00638;MIR159;AP009362.1/69443-69635 4081:Solanum lycopersicum
Length = 193
Score = 52.0 bits (26), Expect = 3e-06
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 46 agggtaaattgagctgctgagctatggatcccacagtcctat 87
|||| ||||||||||||||| ||||||||||| || ||||||
Sbjct: 44 agggaaaattgagctgctgatctatggatccctcaatcctat 85