miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00742;MIR162_2;AASG02018381.1/677-582 3988:Ricinus communis
(castor bean)
Length = 96
Score = 89.7 bits (45), Expect = 1e-17
Identities = 86/97 (88%), Gaps = 2/97 (2%)
Strand = Plus / Plus
Query: 87 cactggaggcagcggttcatcgatcactttgtgcaa-attttgttgtgaaaaataacaca 145
||||||||||||||||||||||||| ||| || || |||||||||||||| | || | |
Sbjct: 1 cactggaggcagcggttcatcgatctcttcctggaagattttgttgtgaaacaaaa-ata 59
Query: 146 aaatacatgaatcgatcgataaacctctgcatccagc 182
||| ||||||||||||||||||||||||||||||||
Sbjct: 60 aaacgcatgaatcgatcgataaacctctgcatccagc 96
>RF00742;MIR162_2;ABIM01004242.1/4343-4433 3649:Carica papaya
(papaya)
Length = 91
Score = 77.8 bits (39), Expect = 5e-14
Identities = 83/96 (86%), Gaps = 5/96 (5%)
Strand = Plus / Plus
Query: 87 cactggaggcagcggttcatcgatcactttgtgcaaattttgttgtgaaaaataacacaa 146
||||||||||||||||||||||||| ||| || ||||| || ||||||||| ||| ||
Sbjct: 1 cactggaggcagcggttcatcgatctcttcctgggaatttggt-gtgaaaaatcacagaa 59
Query: 147 aatacatgaatcgatcgataaacctctgcatccagc 182
||||||||||||||||||||||||||||||||
Sbjct: 60 ----catgaatcgatcgataaacctctgcatccagc 91
>RF00742;MIR162_2;AB006708.1/30672-30582 3702:Arabidopsis thaliana
(thale cress)
Length = 91
Score = 58.0 bits (29), Expect = 5e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 154 gaatcgatcgataaacctctgcatccagc 182
|||||||||||||||||||||||||||||
Sbjct: 63 gaatcgatcgataaacctctgcatccagc 91
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 89 ctggaggcagcggttcatcgatca 112
||||||||||||||||||||||||
Sbjct: 3 ctggaggcagcggttcatcgatca 26
>RF00742;MIR162_2;AARH01005287.1/78295-78385 3694:Populus
trichocarpa
Length = 91
Score = 58.0 bits (29), Expect = 5e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 150 acatgaatcgatcgataaacctctgcatccagc 182
||||||| |||||||||||||||||||||||||
Sbjct: 59 acatgaaccgatcgataaacctctgcatccagc 91
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 87 cactggaggcagcggttcatcgatc 111
|||||||||||||||||||||||||
Sbjct: 1 cactggaggcagcggttcatcgatc 25
>RF00742;MIR162_2;AC162031.12/99168-99079 3880:Medicago truncatula
(barrel medic)
Length = 90
Score = 58.0 bits (29), Expect = 5e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 150 acatgaatcgatcgataaacctctgcatccagc 182
|||||||||| ||||||||||||||||||||||
Sbjct: 58 acatgaatcggtcgataaacctctgcatccagc 90
>RF00742;MIR162_2;ABXC01002838.1/886-1017 4558:Sorghum bicolor
(sorghum)
Length = 132
Score = 58.0 bits (29), Expect = 5e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 154 gaatcgatcgataaacctctgcatccagc 182
|||||||||||||||||||||||||||||
Sbjct: 104 gaatcgatcgataaacctctgcatccagc 132
>RF00742;MIR162_2;EU548677.1/192-105 3702:Arabidopsis thaliana
(thale cress)
Length = 88
Score = 56.0 bits (28), Expect = 2e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 151 catgaatcgatcgataaacctctgcatccagc 182
||||||| ||||||||||||||||||||||||
Sbjct: 57 catgaatagatcgataaacctctgcatccagc 88
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 89 ctggaggcagcggttcatcgatc 111
|||||||||||||||||||||||
Sbjct: 3 ctggaggcagcggttcatcgatc 25
>RF00742;MIR162_2;AK073954.1/290-447 39947:Oryza sativa Japonica
Group
Length = 158
Score = 56.0 bits (28), Expect = 2e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 154 gaatcgatcgataaacctctgcatccag 181
||||||||||||||||||||||||||||
Sbjct: 130 gaatcgatcgataaacctctgcatccag 157
>RF00742;MIR162_2;AAAA02006876.1/21311-21153 39946:Oryza sativa
Indica Group
Length = 159
Score = 56.0 bits (28), Expect = 2e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 154 gaatcgatcgataaacctctgcatccag 181
||||||||||||||||||||||||||||
Sbjct: 131 gaatcgatcgataaacctctgcatccag 158
>RF00742;MIR162_2;AC189332.2/56556-56647 51351:Brassica rapa subsp.
pekinensis
Length = 92
Score = 50.1 bits (25), Expect = 1e-05
Identities = 77/94 (81%), Gaps = 4/94 (4%)
Strand = Plus / Plus
Query: 89 ctggaggcagcggttcatcgatcactttgtgcaaattttgttgtgaaaaataacacaaaa 148
||||||||||||||| ||||||| ||||||| |||||| ||||||| || | |||
Sbjct: 3 ctggaggcagcggttgatcgatctctttgtgggaatttt----tgaaaaacaaaattaaa 58
Query: 149 tacatgaatcgatcgataaacctctgcatccagc 182
|||||| ||||||||||||| ||||||||||
Sbjct: 59 agcatgaacagatcgataaacctgtgcatccagc 92
>RF00742;MIR162_2;AY728420.1/1-91 3694:Populus trichocarpa
Length = 91
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 87 cactggaggcagcggttcatcgatc 111
|||||||||||||||||||||||||
Sbjct: 1 cactggaggcagcggttcatcgatc 25
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 158 cgatcgataaacctctgcatccag 181
||||||||||||||||||||||||
Sbjct: 67 cgatcgataaacctctgcatccag 90
>RF00742;MIR162_2;AM451502.1/2540-2627 29760:Vitis vinifera
Length = 88
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 154 gaatcgatcgataaacctctgcatccagc 182
|||||| ||||||||||||||||||||||
Sbjct: 60 gaatcggtcgataaacctctgcatccagc 88
>RF00742;MIR162_2;BT061256.1/316-448 4577:Zea mays
Length = 133
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 154 gaatcgatcgataaacctctgcatccagc 182
|||||| ||||||||||||||||||||||
Sbjct: 105 gaatcggtcgataaacctctgcatccagc 133
>RF00742;MIR162_2;AACV01010015.1/69608-69724 39947:Oryza sativa
Japonica Group
Length = 117
Score = 48.1 bits (24), Expect = 5e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 154 gaatcgatcgataaacctctgcatccag 181
|||||||||||||| |||||||||||||
Sbjct: 89 gaatcgatcgataagcctctgcatccag 116
