miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00075;mir-166;AC155889.2/42101-41932 3880:Medicago truncatula
(barrel medic)
Length = 170
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 82 gttgatgggaatgttgtttggctcgagg 109
||||||||||||||||||||||||||||
Sbjct: 1 gttgatgggaatgttgtttggctcgagg 28
>RF00075;mir-166;ABIM01018276.1/2199-2062 3649:Carica papaya
(papaya)
Length = 138
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 86 atgggaatgttgtttggctcgagg 109
||||||||||||||||||||||||
Sbjct: 5 atgggaatgttgtttggctcgagg 28
>RF00075;mir-166;BABK01008352.1/1692-1590 34305:Lotus japonicus
Length = 103
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 20 tcggaccaggcttcattcccttca 43
||||||||||||||||||||||||
Sbjct: 78 tcggaccaggcttcattcccttca 101
>RF00075;mir-166;EU945393.1/89-202 4577:Zea mays
Length = 114
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 20 tcggaccaggcttcattcccttcaga 45
|||||||||||||||||||| |||||
Sbjct: 89 tcggaccaggcttcattcccctcaga 114
>RF00075;mir-166;ABXC01000758.1/126828-126715 4558:Sorghum bicolor
(sorghum)
Length = 114
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 20 tcggaccaggcttcattcccttcaga 45
|||||||||||||||||||| |||||
Sbjct: 89 tcggaccaggcttcattcccctcaga 114
>RF00075;mir-166;AAAA02025700.1/14722-14582 39946:Oryza sativa
Indica Group
Length = 141
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 20 tcggaccaggcttcattccctt 41
||||||||||||||||||||||
Sbjct: 116 tcggaccaggcttcattccctt 137
>RF00075;mir-166;AACV01018689.1/7378-7519 39947:Oryza sativa
Japonica Group
Length = 142
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 20 tcggaccaggcttcattccctt 41
||||||||||||||||||||||
Sbjct: 117 tcggaccaggcttcattccctt 138
>RF00075;mir-166;AAAA02030332.1/11899-12019 39946:Oryza sativa
Indica Group
Length = 121
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 20 tcggaccaggcttcattcccttcaga 45
|||||||||||||||||||| |||||
Sbjct: 96 tcggaccaggcttcattcccctcaga 121
