miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00640;MIR167_1;AARH01004314.1/38692-38599 3694:Populus
trichocarpa
Length = 94
Score = 97.6 bits (49), Expect = 3e-20
Identities = 80/89 (89%), Gaps = 1/89 (1%)
Strand = Plus / Plus
Query: 7 caccactatcagatgaagctgccagcatgatcttaactttcctcctttgctcgaggaatg 66
|||| ||||||| |||||||||||||||||||||| | ||||||||||| | |||||| |
Sbjct: 1 cacctctatcagttgaagctgccagcatgatcttagccttcctcctttg-ttgaggaaag 59
Query: 67 atacagatcatgcggcagtttcacctgtt 95
| |||||||||| ||||||||||||||||
Sbjct: 60 aaacagatcatgtggcagtttcacctgtt 88
>RF00640;MIR167_1;BABK01022869.1/1081-990 34305:Lotus japonicus
Length = 92
Score = 65.9 bits (33), Expect = 1e-10
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 7 caccactatcagatgaagctgccagcatgatcttaactttcctcc 51
|||||||| ||| |||||||||||||||||||||||||| |||||
Sbjct: 1 caccactaccagttgaagctgccagcatgatcttaacttccctcc 45
>RF00640;MIR167_1;CAAP02000793.1/41456-41548 29760:Vitis vinifera
Length = 93
Score = 61.9 bits (31), Expect = 2e-09
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 7 caccactatcagatgaagctgccagcatgatcttaactt 45
|||||||||||| |||||||||||||||||||| |||||
Sbjct: 1 caccactatcagttgaagctgccagcatgatctaaactt 39
>RF00640;MIR167_1;ABIM01011014.1/4156-4251 3649:Carica papaya
(papaya)
Length = 96
Score = 60.0 bits (30), Expect = 7e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 14 atcagatgaagctgccagcatgatcttaac 43
||||||||||||||||||||||||||||||
Sbjct: 8 atcagatgaagctgccagcatgatcttaac 37
>RF00640;MIR167_1;AASG02005785.1/15088-15180 3988:Ricinus communis
(castor bean)
Length = 93
Score = 58.0 bits (29), Expect = 3e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 7 caccactatcagatgaagctgccagcatgatct 39
|||||||||||| ||||||||||||||||||||
Sbjct: 1 caccactatcagttgaagctgccagcatgatct 33
>RF00640;MIR167_1;AC209507.1/126147-126250 4081:Solanum
lycopersicum
Length = 104
Score = 56.0 bits (28), Expect = 1e-07
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 10 cactatcagatgaagctgccagcatgatcttaactttcct 49
||||| ||| |||||||||||||||||||| |||||||||
Sbjct: 4 cactagcagttgaagctgccagcatgatctaaactttcct 43
>RF00640;MIR167_1;ABIM01012099.1/6617-6710 3649:Carica papaya
(papaya)
Length = 94
Score = 54.0 bits (27), Expect = 4e-07
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 7 caccactatcagatgaagctgccagcatgatcttaactttcct 49
||||| || ||| |||||||||||||||||||| |||||||||
Sbjct: 1 caccagtagcagttgaagctgccagcatgatctaaactttcct 43
>RF00640;MIR167_1;AARH01008931.1/3492-3395 3694:Populus
trichocarpa
Length = 98
Score = 54.0 bits (27), Expect = 4e-07
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 7 caccactatcagatgaagctgccagcatgatcttaactttcct 49
|||||||| || |||||||||||||||||||| |||||||||
Sbjct: 1 caccactagtagttgaagctgccagcatgatctgaactttcct 43
>RF00640;MIR167_1;AC225328.1/13792-13888 4081:Solanum lycopersicum
Length = 97
Score = 54.0 bits (27), Expect = 4e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 8 accactatcagatgaagctgccagcatgatcttaacttt 46
||||||| ||| |||||||||||||||||||| ||||||
Sbjct: 2 accactagcagttgaagctgccagcatgatctaaacttt 40
>RF00640;MIR167_1;AARH01002853.1/45908-46003 3694:Populus
trichocarpa
Length = 96
Score = 50.1 bits (25), Expect = 7e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 7 caccactatcagatgaagctgccagcatgatct 39
|||||||| ||| ||||||||||||||||||||
Sbjct: 1 caccactagcagttgaagctgccagcatgatct 33
>RF00640;MIR167_1;AARH01001059.1/157614-157519 3694:Populus
trichocarpa
Length = 96
Score = 50.1 bits (25), Expect = 7e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 7 caccactatcagatgaagctgccagcatgatct 39
|||||||| ||| ||||||||||||||||||||
Sbjct: 1 caccactagcagttgaagctgccagcatgatct 33
>RF00640;MIR167_1;CAAP02000379.1/24621-24714 29760:Vitis vinifera
Length = 94
Score = 46.1 bits (23), Expect = 1e-04
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 7 caccactatcagatgaagctgccagcatgatcttaactt 45
||||| || ||| |||||||||||||||||||| |||||
Sbjct: 1 caccagtagcagttgaagctgccagcatgatctcaactt 39
>RF00640;MIR167_1;ABXC01000720.1/131669-131557 4558:Sorghum
bicolor (sorghum)
Length = 113
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 agatgaagctgccagcatgatct 39
|||||||||||||||||||||||
Sbjct: 11 agatgaagctgccagcatgatct 33
>RF00640;MIR167_1;EU532400.1/147-239 3634:Gossypium barbadense
(sea-island cotton)
Length = 93
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 20 tgaagctgccagcatgatcttaactt 45
|||||||||||||||||||| |||||
Sbjct: 14 tgaagctgccagcatgatctaaactt 39
>RF00640;MIR167_1;AC189327.2/282-159 51351:Brassica rapa subsp.
pekinensis
Length = 124
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 18 gatgaagctgccagcatgatct 39
||||||||||||||||||||||
Sbjct: 12 gatgaagctgccagcatgatct 33
>RF00640;MIR167_1;EU548950.1/213-338 3702:Arabidopsis thaliana
(thale cress)
Length = 126
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 18 gatgaagctgccagcatgatct 39
||||||||||||||||||||||
Sbjct: 12 gatgaagctgccagcatgatct 33
>RF00640;MIR167_1;AC225328.1/5014-5119 4081:Solanum lycopersicum
Length = 106
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 20 tgaagctgccagcatgatcttaactt 45
|||||||||||||||||||| |||||
Sbjct: 14 tgaagctgccagcatgatctaaactt 39
>RF00640;MIR167_1;ABXC01000326.1/41757-41921 4558:Sorghum bicolor
(sorghum)
Length = 165
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 18 gatgaagctgccagcatgatct 39
||||||||||||||||||||||
Sbjct: 12 gatgaagctgccagcatgatct 33
>RF00640;MIR167_1;AY551235.1/11-128 4530:Oryza sativa (rice)
Length = 118
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 18 gatgaagctgccagcatgatct 39
||||||||||||||||||||||
Sbjct: 12 gatgaagctgccagcatgatct 33
