miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00643;MIR171_1;AASG02001674.1/19617-19518 3988:Ricinus communis
(castor bean)
Length = 100
Score = 95.6 bits (48), Expect = 1e-19
Identities = 78/88 (88%)
Strand = Plus / Plus
Query: 6 acgggatattggtgcggttcaataagaaaacggtgctcaatactttttgagctccgcttt 65
||||||||||||| ||||||||||||||||| |||||||| | || || || | |||||
Sbjct: 7 acgggatattggtccggttcaataagaaaacagtgctcaaaatgttatgggccctgcttt 66
Query: 66 ttgattgagccgcgccaatatcacgtgc 93
|||||||||||| |||||||||||||||
Sbjct: 67 ttgattgagccgtgccaatatcacgtgc 94
>RF00643;MIR171_1;AM449096.1/12478-12578 29760:Vitis vinifera
Length = 101
Score = 91.7 bits (46), Expect = 2e-18
Identities = 80/89 (89%), Gaps = 3/89 (3%)
Strand = Plus / Plus
Query: 6 acgggatattggtgcggttcaataagaaaacggtgct--caatactttttgagctccgct 63
||||||||||||||||||||||||||||| | ||||| |||| ||||||||| || | |
Sbjct: 7 acgggatattggtgcggttcaataagaaagcagtgctcgcaat-ctttttgagttctggt 65
Query: 64 ttttgattgagccgcgccaatatcacgtg 92
|||||||||||||| ||||||||||||||
Sbjct: 66 ttttgattgagccgtgccaatatcacgtg 94
>RF00643;MIR171_1;ABIM01016020.1/2222-2123 3649:Carica papaya
(papaya)
Length = 100
Score = 83.8 bits (42), Expect = 4e-16
Identities = 75/86 (87%)
Strand = Plus / Plus
Query: 6 acgggatattggtgcggttcaataagaaaacggtgctcaatactttttgagctccgcttt 65
||||||||||||| ||||||||||||||||| |||||| | | ||||| || |||||
Sbjct: 7 acgggatattggtccggttcaataagaaaacagtgctctgatcgtgttgagttctgcttt 66
Query: 66 ttgattgagccgcgccaatatcacgt 91
|||||||||||| |||||||||||||
Sbjct: 67 ttgattgagccgtgccaatatcacgt 92
>RF00643;MIR171_1;BABK01058807.1/722-623 34305:Lotus japonicus
Length = 100
Score = 67.9 bits (34), Expect = 2e-11
Identities = 73/86 (84%)
Strand = Plus / Plus
Query: 6 acgggatattggtgcggttcaataagaaaacggtgctcaatactttttgagctccgcttt 65
||||||||||||| ||||||||||||||| | |||| | || ||| ||||| | |||
Sbjct: 7 acgggatattggtccggttcaataagaaagcaaagctcgaaacgtttggagctttgtttt 66
Query: 66 ttgattgagccgcgccaatatcacgt 91
|||||||||||| |||||||||||||
Sbjct: 67 ttgattgagccgtgccaatatcacgt 92
>RF00643;MIR171_1;AC212766.1/32177-32277 4081:Solanum lycopersicum
Length = 101
Score = 61.9 bits (31), Expect = 1e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 62 ctttttgattgagccgcgccaatatcacgtg 92
|||||||||||||||||||||||||||||||
Sbjct: 64 ctttttgattgagccgcgccaatatcacgtg 94
>RF00643;MIR171_1;AP010316.1/5761-5862 34305:Lotus japonicus
Length = 102
Score = 56.0 bits (28), Expect = 9e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 67 tgattgagccgcgccaatatcacgtgcc 94
||||||||||||||||||||||||||||
Sbjct: 70 tgattgagccgcgccaatatcacgtgcc 97
>RF00643;MIR171_1;AASG02000735.1/28318-28416 3988:Ricinus communis
(castor bean)
Length = 99
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 65 tttgattgagccgcgccaatatcacgtgc 93
||||||||||||| |||||||||||||||
Sbjct: 65 tttgattgagccgtgccaatatcacgtgc 93
>RF00643;MIR171_1;AL606645.2/80760-80660 39947:Oryza sativa
Japonica Group
Length = 101
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 6 acgggatattggtgcggttcaataagaaa 34
||||||||||||||||||||||| |||||
Sbjct: 7 acgggatattggtgcggttcaatcagaaa 35
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 56 gctccgctttttgattgagccgcgccaatatcacgt 91
||||| || ||||||||||||| |||||||||||||
Sbjct: 58 gctccactctttgattgagccgtgccaatatcacgt 93
>RF00643;MIR171_1;ABIM01020876.1/9287-9189 3649:Carica papaya
(papaya)
Length = 99
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 65 tttgattgagccgcgccaatatcacgtg 92
||||||||||||| ||||||||||||||
Sbjct: 65 tttgattgagccgtgccaatatcacgtg 92
>RF00643;MIR171_1;AC134967.20/116067-116170 3880:Medicago
truncatula (barrel medic)
Length = 104
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 65 tttgattgagccgcgccaatatcacgtg 92
||||||||||||| ||||||||||||||
Sbjct: 70 tttgattgagccgtgccaatatcacgtg 97
>RF00643;MIR171_1;ABXC01004438.1/173968-173868 4558:Sorghum
bicolor (sorghum)
Length = 101
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 56 gctccgctttttgattgagccgcgccaatatcacgt 91
||||| || ||||||||||||| |||||||||||||
Sbjct: 58 gctccactctttgattgagccgtgccaatatcacgt 93
>RF00643;MIR171_1;AY551250.1/5-106 4530:Oryza sativa (rice)
Length = 102
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 64 ttttgattgagccgcgccaatatcacgt 91
|||||||||||||| |||||||||||||
Sbjct: 67 ttttgattgagccgtgccaatatcacgt 94
>RF00643;MIR171_1;ABIM01004247.1/37375-37272 3649:Carica papaya
(papaya)
Length = 104
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 65 tttgattgagccgcgccaatatcacgt 91
||||||||||||| |||||||||||||
Sbjct: 70 tttgattgagccgtgccaatatcacgt 96
>RF00643;MIR171_1;ABIM01001615.1/3078-3177 3649:Carica papaya
(papaya)
Length = 100
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 65 tttgattgagccgcgccaatatc 87
|||||||||||||||||||||||
Sbjct: 66 tttgattgagccgcgccaatatc 88
>RF00643;MIR171_1;EU549150.1/415-315 3702:Arabidopsis thaliana
(thale cress)
Length = 101
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 10 gatattggtgcggttcaataagaaaac 36
||||||||||||||||||| |||||||
Sbjct: 11 gatattggtgcggttcaatcagaaaac 37
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 65 tttgattgagccgcgccaatatcacg 90
||||||||||||| ||||||||||||
Sbjct: 67 tttgattgagccgtgccaatatcacg 92
>RF00643;MIR171_1;AM446221.1/52246-52149 29760:Vitis vinifera
Length = 98
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 65 tttgattgagccgcgccaatatcacgt 91
||||||||||||| |||||||||||||
Sbjct: 64 tttgattgagccgtgccaatatcacgt 90
>RF00643;MIR171_1;CAAP02000222.1/31256-31356 29760:Vitis vinifera
Length = 101
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 67 tgattgagccgcgccaatatcac 89
|||||||||||||||||||||||
Sbjct: 69 tgattgagccgcgccaatatcac 91
>RF00643;MIR171_1;BT035609.1/466-577 4577:Zea mays
Length = 112
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 67 tgattgagccgcgccaatatcacgtgccact 97
||||||||||| ||||||||||||| |||||
Sbjct: 80 tgattgagccgtgccaatatcacgtcccact 110
>RF00643;MIR171_1;ABXC01002454.1/83659-83541 4558:Sorghum bicolor
(sorghum)
Length = 119
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 67 tgattgagccgcgccaatatcac 89
|||||||||||||||||||||||
Sbjct: 87 tgattgagccgcgccaatatcac 109
>RF00643;MIR171_1;AY728474.1/2-89 3694:Populus trichocarpa
Length = 88
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 68 gattgagccgcgccaatatcac 89
||||||||||||||||||||||
Sbjct: 65 gattgagccgcgccaatatcac 86
>RF00643;MIR171_1;AASG02008156.1/3849-3747 3988:Ricinus communis
(castor bean)
Length = 103
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 68 gattgagccgcgccaatatcac 89
||||||||||||||||||||||
Sbjct: 72 gattgagccgcgccaatatcac 93
>RF00643;MIR171_1;AC152351.7/84740-84636 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 68 gattgagccgcgccaatatcac 89
||||||||||||||||||||||
Sbjct: 74 gattgagccgcgccaatatcac 95
>RF00643;MIR171_1;AC209588.1/19088-18986 4081:Solanum lycopersicum
Length = 103
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 68 gattgagccgcgccaatatcac 89
||||||||||||||||||||||
Sbjct: 72 gattgagccgcgccaatatcac 93
>RF00643;MIR171_1;AM437215.2/7577-7677 29760:Vitis vinifera
Length = 101
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 68 gattgagccgcgccaatatcac 89
||||||||||||||||||||||
Sbjct: 70 gattgagccgcgccaatatcac 91
>RF00643;MIR171_1;ABEU01001861.1/185639-185542
145481:Physcomitrella patens subsp. patens
Length = 98
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 68 gattgagccgcgccaatatcac 89
||||||||||||||||||||||
Sbjct: 67 gattgagccgcgccaatatcac 88
>RF00643;MIR171_1;ABEU01005399.1/9805-9901 145481:Physcomitrella
patens subsp. patens
Length = 97
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 68 gattgagccgcgccaatatcac 89
||||||||||||||||||||||
Sbjct: 66 gattgagccgcgccaatatcac 87
