miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00692;MIR171_2;AARH01006308.1/48604-48716 3694:Populus
trichocarpa
Length = 113
Score = 73.8 bits (37), Expect = 7e-13
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 119 agacgagccgaatcaatatcactcttgtatgcttctt 155
|||||||||||||||||||||||||||||||||||||
Sbjct: 76 agacgagccgaatcaatatcactcttgtatgcttctt 112
Score = 65.9 bits (33), Expect = 2e-10
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 28 tggagaagtagacatggtgtgatattggttcggctcatctt 68
|||||||||||||| |||||||||||||| |||||||||||
Sbjct: 1 tggagaagtagacacggtgtgatattggtccggctcatctt 41
>RF00692;MIR171_2;CAAP02000606.1/45780-45883 29760:Vitis vinifera
Length = 104
Score = 73.8 bits (37), Expect = 7e-13
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 28 tggagaagtagacatggtgtgatattggttcggctcatctt 68
||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1 tggagaagtagacatggtgtggtattggttcggctcatctt 41
Score = 67.9 bits (34), Expect = 4e-11
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 119 agacgagccgaatcaatatcactcttgtatgcttcttt 156
|||||||||||| |||||||||||||||||||||||||
Sbjct: 67 agacgagccgaaccaatatcactcttgtatgcttcttt 104
>RF00692;MIR171_2;AASG02011537.1/4995-5113 3988:Ricinus communis
(castor bean)
Length = 119
Score = 69.9 bits (35), Expect = 1e-11
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 122 cgagccgaatcaatatcactcttgtatgcttcttt 156
|||||||||||||||||||||||||||||||||||
Sbjct: 85 cgagccgaatcaatatcactcttgtatgcttcttt 119
Score = 52.0 bits (26), Expect = 2e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 30 gagaagtagacatggtgtgatattggttcggctcatct 67
||||||||||||||| ||||||||||| || |||||||
Sbjct: 3 gagaagtagacatggcgtgatattggtccgactcatct 40
>RF00692;MIR171_2;AARH01005111.1/21886-21779 3694:Populus
trichocarpa
Length = 108
Score = 61.9 bits (31), Expect = 3e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 119 agacgagccgaatcaatatcactcttgtatgcttc 153
||||||||||||||||||||||||||||| |||||
Sbjct: 71 agacgagccgaatcaatatcactcttgtacgcttc 105
>RF00692;MIR171_2;CU571241.2/65429-65545 3880:Medicago truncatula
(barrel medic)
Length = 117
Score = 61.9 bits (31), Expect = 3e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 119 agacgagccgaatcaatatcactcttgtatgcttc 153
|||||||||||||||||||||||||||| ||||||
Sbjct: 80 agacgagccgaatcaatatcactcttgtttgcttc 114
>RF00692;MIR171_2;ABIM01001505.1/16686-16573 3649:Carica papaya
(papaya)
Length = 114
Score = 58.0 bits (29), Expect = 4e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 119 agacgagccgaatcaatatcactcttgtatgcttctt 155
|||||||||||||||||||||||| |||||| |||||
Sbjct: 77 agacgagccgaatcaatatcactcctgtatgtttctt 113
>RF00692;MIR171_2;EF424185.1/156-34 49314:Annona cherimola
Length = 123
Score = 54.0 bits (27), Expect = 6e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 122 cgagccgaatcaatatcactcttgtat 148
|||||||||||||||||||||||||||
Sbjct: 89 cgagccgaatcaatatcactcttgtat 115
>RF00692;MIR171_2;CU571241.2/65608-65725 3880:Medicago truncatula
(barrel medic)
Length = 118
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 119 agacgagccgaatcaatatcactc 142
||||||||||||||||||||||||
Sbjct: 81 agacgagccgaatcaatatcactc 104
>RF00692;MIR171_2;BABK01003433.1/149-44 34305:Lotus japonicus
Length = 106
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 123 gagccgaatcaatatcactcttgt 146
||||||||||||||||||||||||
Sbjct: 73 gagccgaatcaatatcactcttgt 96
