miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00451;mir-395;AARH01006980.1/2290-2177 3694:Populus trichocarpa
Length = 114
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 69 cactgaagtgtttgggggaactctgggtg 97
|||||||||||||||||||||||||||||
Sbjct: 82 cactgaagtgtttgggggaactctgggtg 110
>RF00451;mir-395;AASG02002767.1/10540-10432 3988:Ricinus communis
(castor bean)
Length = 109
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 70 actgaagtgtttgggggaactctgggtgcca 100
||||||||||||||||||||||| |||||||
Sbjct: 78 actgaagtgtttgggggaactctaggtgcca 108
>RF00451;mir-395;ABIM01010538.1/1971-1885 3649:Carica papaya
(papaya)
Length = 87
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 68 ccactgaagtgtttgggggaactctgggtg 97
|||||||||||||||||||||| |||||||
Sbjct: 54 ccactgaagtgtttgggggaacactgggtg 83
>RF00451;mir-395;ABIM01022224.1/4670-4748 3649:Carica papaya
(papaya)
Length = 79
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 68 ccactgaagtgtttgggggaactctgggtg 97
||||||||||||||||||||||||| ||||
Sbjct: 46 ccactgaagtgtttgggggaactcttggtg 75
>RF00451;mir-395;ABXC01004449.1/8869-8999 4558:Sorghum bicolor
(sorghum)
Length = 131
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 72 tgaagtgtttgggggaactctgggtg 97
||||||||||||||||||||||||||
Sbjct: 102 tgaagtgtttgggggaactctgggtg 127
>RF00451;mir-395;ABXC01004440.1/121340-121256 4558:Sorghum bicolor
(sorghum)
Length = 85
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 72 tgaagtgtttgggggaactctgggtgccac 101
||||||||||||||||||||| ||||||||
Sbjct: 56 tgaagtgtttgggggaactcttggtgccac 85
>RF00451;mir-395;ABIM01022224.1/3975-3886 3649:Carica papaya
(papaya)
Length = 90
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 70 actgaagtgtttgggggaactctgg 94
|||||||||||||||||||||||||
Sbjct: 59 actgaagtgtttgggggaactctgg 83
>RF00451;mir-395;ABIM01022223.1/1552-1464 3649:Carica papaya
(papaya)
Length = 89
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 70 actgaagtgtttgggggaactctgg 94
|||||||||||||||||||||||||
Sbjct: 59 actgaagtgtttgggggaactctgg 83
>RF00451;mir-395;ABIM01022224.1/4874-4952 3649:Carica papaya
(papaya)
Length = 79
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 68 ccactgaagtgtttgggggaactct 92
|||||||||||||||||||||||||
Sbjct: 46 ccactgaagtgtttgggggaactct 70
>RF00451;mir-395;AARH01003029.1/111607-111705 3694:Populus
trichocarpa
Length = 99
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 67 cccactgaagtgtttgggggaactc 91
|||||||||||||||||||||||||
Sbjct: 65 cccactgaagtgtttgggggaactc 89
>RF00451;mir-395;AP008214.1/3293470-3293581 39947:Oryza sativa
Japonica Group
Length = 112
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 72 tgaagtgtttgggggaactctgggtgcca 100
||||||||||||||||||||| |||||||
Sbjct: 83 tgaagtgtttgggggaactctcggtgcca 111
>RF00451;mir-395;AP004460.2/71210-71323 39947:Oryza sativa Japonica
Group
Length = 114
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 72 tgaagtgtttgggggaactctgggtgcca 100
||||||||||||||||||||| |||||||
Sbjct: 85 tgaagtgtttgggggaactcttggtgcca 113
>RF00451;mir-395;FM164007.1/237-145 3702:Arabidopsis thaliana
(thale cress)
Length = 93
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 68 ccactgaagtgtttgggggaactc 91
||||||||||||||||||||||||
Sbjct: 60 ccactgaagtgtttgggggaactc 83
>RF00451;mir-395;EU549519.1/323-224 3702:Arabidopsis thaliana
(thale cress)
Length = 100
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 68 ccactgaagtgtttgggggaactc 91
||||||||||||||||||||||||
Sbjct: 67 ccactgaagtgtttgggggaactc 90
>RF00451;mir-395;AASG02008621.1/1369-1454 3988:Ricinus communis
(castor bean)
Length = 86
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 70 actgaagtgtttgggggaactctgggtg 97
||||||||||||||||||||||| ||||
Sbjct: 55 actgaagtgtttgggggaactcttggtg 82
>RF00451;mir-395;ABIM01010538.1/2937-3031 3649:Carica papaya
(papaya)
Length = 95
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 71 ctgaagtgtttgggggaactctgggtg 97
||||||||||||||||||||| |||||
Sbjct: 65 ctgaagtgtttgggggaactccgggtg 91
>RF00451;mir-395;AASG02002767.1/24567-24665 3988:Ricinus communis
(castor bean)
Length = 99
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 69 cactgaagtgtttgggggaactc 91
|||||||||||||||||||||||
Sbjct: 67 cactgaagtgtttgggggaactc 89
>RF00451;mir-395;AM473306.2/7052-6961 29760:Vitis vinifera
Length = 92
Score = 46.1 bits (23), Expect = 9e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 70 actgaagtgtttgggggaactctgggtgcca 100
|||||||||||||||||||||| |||||||
Sbjct: 61 actgaagtgtttgggggaactcctggtgcca 91
>RF00451;mir-395;EU549523.1/332-238 3702:Arabidopsis thaliana
(thale cress)
Length = 95
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 70 actgaagtgtttgggggaactc 91
||||||||||||||||||||||
Sbjct: 64 actgaagtgtttgggggaactc 85
>RF00451;mir-395;AARH01003032.1/301169-301270 3694:Populus
trichocarpa
Length = 102
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 70 actgaagtgtttgggggaactc 91
||||||||||||||||||||||
Sbjct: 71 actgaagtgtttgggggaactc 92
>RF00451;mir-395;AARH01006982.1/286-388 3694:Populus trichocarpa
Length = 103
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 70 actgaagtgtttgggggaactc 91
||||||||||||||||||||||
Sbjct: 72 actgaagtgtttgggggaactc 93
>RF00451;mir-395;AASG02002767.1/19144-19051 3988:Ricinus communis
(castor bean)
Length = 94
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 70 actgaagtgtttgggggaactc 91
||||||||||||||||||||||
Sbjct: 63 actgaagtgtttgggggaactc 84
>RF00451;mir-395;AC194694.1/86216-86306 4081:Solanum lycopersicum
Length = 91
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 71 ctgaagtgtttgggggaactct 92
||||||||||||||||||||||
Sbjct: 61 ctgaagtgtttgggggaactct 82
>RF00451;mir-395;AC194694.1/94299-94389 4081:Solanum lycopersicum
Length = 91
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 70 actgaagtgtttgggggaactc 91
||||||||||||||||||||||
Sbjct: 60 actgaagtgtttgggggaactc 81
>RF00451;mir-395;AC194694.1/94123-94213 4081:Solanum lycopersicum
Length = 91
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 70 actgaagtgtttgggggaactc 91
||||||||||||||||||||||
Sbjct: 60 actgaagtgtttgggggaactc 81
>RF00451;mir-395;AM459231.2/3067-3154 29760:Vitis vinifera
Length = 88
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 70 actgaagtgtttgggggaactc 91
||||||||||||||||||||||
Sbjct: 57 actgaagtgtttgggggaactc 78
>RF00451;mir-395;CAAP02005254.1/14718-14811 29760:Vitis vinifera
Length = 94
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 70 actgaagtgtttgggggaactc 91
||||||||||||||||||||||
Sbjct: 63 actgaagtgtttgggggaactc 84
>RF00451;mir-395;CAAP02005177.1/4229-4322 29760:Vitis vinifera
Length = 94
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 70 actgaagtgtttgggggaactc 91
||||||||||||||||||||||
Sbjct: 63 actgaagtgtttgggggaactc 84
>RF00451;mir-395;AM452429.2/43298-43211 29760:Vitis vinifera
Length = 88
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 70 actgaagtgtttgggggaactc 91
||||||||||||||||||||||
Sbjct: 57 actgaagtgtttgggggaactc 78
>RF00451;mir-395;AM429340.2/1581-1494 29760:Vitis vinifera
Length = 88
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 70 actgaagtgtttgggggaactc 91
||||||||||||||||||||||
Sbjct: 57 actgaagtgtttgggggaactc 78
>RF00451;mir-395;ABXC01004559.1/90896-91004 4558:Sorghum bicolor
(sorghum)
Length = 109
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 72 tgaagtgtttgggggaactctgggtg 97
||||||||||||||||||||| ||||
Sbjct: 80 tgaagtgtttgggggaactctaggtg 105
>RF00451;mir-395;ABXC01004440.1/120848-120746 4558:Sorghum bicolor
(sorghum)
Length = 103
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 72 tgaagtgtttgggggaactctgggtg 97
||||||||||||||||||||| ||||
Sbjct: 74 tgaagtgtttgggggaactcttggtg 99
>RF00451;mir-395;ABXC01004449.1/9781-9883 4558:Sorghum bicolor
(sorghum)
Length = 103
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 72 tgaagtgtttgggggaactctgggtg 97
||||||||||||||||||||| ||||
Sbjct: 74 tgaagtgtttgggggaactcttggtg 99
>RF00451;mir-395;ABXC01004559.1/90713-90831 4558:Sorghum bicolor
(sorghum)
Length = 119
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 72 tgaagtgtttgggggaactctgggtg 97
||||||||||||||||||||| ||||
Sbjct: 90 tgaagtgtttgggggaactctaggtg 115
>RF00451;mir-395;AP008214.1/3293135-3293246 39947:Oryza sativa
Japonica Group
Length = 112
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 72 tgaagtgtttgggggaactctgggtg 97
||||||||||||||||||||| ||||
Sbjct: 83 tgaagtgtttgggggaactctaggtg 108
>RF00451;mir-395;AP008214.1/3292800-3292911 39947:Oryza sativa
Japonica Group
Length = 112
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 72 tgaagtgtttgggggaactctgggtg 97
||||||||||||||||||||| ||||
Sbjct: 83 tgaagtgtttgggggaactctaggtg 108
>RF00451;mir-395;AAAA02014891.1/20403-20488 39946:Oryza sativa
Indica Group
Length = 86
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 72 tgaagtgtttgggggaactctgggtg 97
||||||||||||||||||||| ||||
Sbjct: 57 tgaagtgtttgggggaactctcggtg 82
