miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00648;MIR396;AARH01002977.1/26105-26230 3694:Populus trichocarpa
Length = 126
Score = 77.8 bits (39), Expect = 3e-14
Identities = 39/39 (100%)
Strand = Plus / Plus
Query: 78 tttgttgcggttcaataaagctgtgggaagatacaaaca 116
|||||||||||||||||||||||||||||||||||||||
Sbjct: 88 tttgttgcggttcaataaagctgtgggaagatacaaaca 126
Score = 50.1 bits (25), Expect = 8e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 14 gtatttttccacagctttcttgaactgca 42
||||| |||||||||||||||||||||||
Sbjct: 5 gtattcttccacagctttcttgaactgca 33
>RF00648;MIR396;AARH01007577.1/181152-181286 3694:Populus
trichocarpa
Length = 135
Score = 69.9 bits (35), Expect = 8e-12
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 78 tttgttgcggttcaataaagctgtgggaagatacaaaca 116
|||| ||||||||||||||||||||||||||||||||||
Sbjct: 97 tttgctgcggttcaataaagctgtgggaagatacaaaca 135
Score = 58.0 bits (29), Expect = 3e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 10 ctttgtatttttccacagctttcttgaactgca 42
||||||||| |||||||||||||||||||||||
Sbjct: 1 ctttgtattcttccacagctttcttgaactgca 33
>RF00648;MIR396;AM489352.2/7330-7448 29760:Vitis vinifera
Length = 119
Score = 63.9 bits (32), Expect = 5e-10
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 81 gttgcggttcaataaagctgtgggaagatacaaaca 116
||||||||||||||||||||||||||||||| ||||
Sbjct: 84 gttgcggttcaataaagctgtgggaagataccaaca 119
Score = 60.0 bits (30), Expect = 8e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 10 ctttgtatttttccacagctttcttgaactgcat 43
||||||||| ||||||||||||||||||||||||
Sbjct: 1 ctttgtattcttccacagctttcttgaactgcat 34
>RF00648;MIR396;ABIM01011222.1/24137-24037 3649:Carica papaya
(papaya)
Length = 101
Score = 61.9 bits (31), Expect = 2e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 82 ttgcggttcaataaagctgtgggaagataca 112
|||||||||||||||||||||||||||||||
Sbjct: 67 ttgcggttcaataaagctgtgggaagataca 97
Score = 60.0 bits (30), Expect = 8e-09
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 11 tttgtatttttccacagctttcttgaactgcatcatct 48
|||||||| |||||||||||||||||||||||| ||||
Sbjct: 2 tttgtattcttccacagctttcttgaactgcatgatct 39
>RF00648;MIR396;AC006250.4/85478-85629 3702:Arabidopsis thaliana
(thale cress)
Length = 152
Score = 61.9 bits (31), Expect = 2e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 82 ttgcggttcaataaagctgtgggaagataca 112
|||||||||||||||||||||||||||||||
Sbjct: 118 ttgcggttcaataaagctgtgggaagataca 148
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 13 tgtatttttccacagctttcttgaactgca 42
|||||| |||||||||||||||||||||||
Sbjct: 4 tgtattcttccacagctttcttgaactgca 33
>RF00648;MIR396;AASG02007435.1/277-442 3988:Ricinus communis
(castor bean)
Length = 166
Score = 61.9 bits (31), Expect = 2e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 10 ctttgtatttttccacagctttcttgaactgcatc 44
||||||||| |||||||||||||||||||||||||
Sbjct: 1 ctttgtattcttccacagctttcttgaactgcatc 35
Score = 61.9 bits (31), Expect = 2e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 82 ttgcggttcaataaagctgtgggaagatacaaaca 116
|||||||||||||||||||||||||||||| ||||
Sbjct: 132 ttgcggttcaataaagctgtgggaagatacgaaca 166
>RF00648;MIR396;AC153121.15/56895-56790 3880:Medicago truncatula
(barrel medic)
Length = 106
Score = 61.9 bits (31), Expect = 2e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 10 ctttgtatttttccacagctttcttgaactgcatc 44
||||||||| |||||||||||||||||||||||||
Sbjct: 1 ctttgtattcttccacagctttcttgaactgcatc 35
Score = 61.9 bits (31), Expect = 2e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 82 ttgcggttcaataaagctgtgggaagataca 112
|||||||||||||||||||||||||||||||
Sbjct: 72 ttgcggttcaataaagctgtgggaagataca 102
>RF00648;MIR396;AP010531.1/68027-68126 34305:Lotus japonicus
Length = 100
Score = 61.9 bits (31), Expect = 2e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 10 ctttgtatttttccacagctttcttgaactgcatc 44
||||||||| |||||||||||||||||||||||||
Sbjct: 1 ctttgtattcttccacagctttcttgaactgcatc 35
Score = 58.0 bits (29), Expect = 3e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 82 ttgcggttcaataaagctgtgggaagata 110
|||||||||||||||||||||||||||||
Sbjct: 66 ttgcggttcaataaagctgtgggaagata 94
>RF00648;MIR396;AC226039.1/69968-70054 4641:Musa acuminata
Length = 87
Score = 50.1 bits (25), Expect = 8e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 tatttttccacagctttcttgaact 39
|||||||||||||||||||||||||
Sbjct: 6 tatttttccacagctttcttgaact 30
>RF00648;MIR396;ABXC01006376.1/116039-116148 4558:Sorghum bicolor
(sorghum)
Length = 110
Score = 50.1 bits (25), Expect = 8e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 20 ttccacagctttcttgaactgcatc 44
|||||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactgcatc 35
>RF00648;MIR396;AAAA02018332.1/10514-10398 39946:Oryza sativa
Indica Group
Length = 117
Score = 50.1 bits (25), Expect = 8e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 20 ttccacagctttcttgaactgcatc 44
|||||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactgcatc 35
>RF00648;MIR396;EU941272.1/182-300 4577:Zea mays
Length = 119
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 20 ttccacagctttcttgaactgcat 43
||||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactgcat 34
>RF00648;MIR396;ABXC01002982.1/44228-44122 4558:Sorghum bicolor
(sorghum)
Length = 107
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 20 ttccacagctttcttgaactgcat 43
||||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactgcat 34
>RF00648;MIR396;ABIM01011222.1/17767-17925 3649:Carica papaya
(papaya)
Length = 159
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tttttccacagctttcttgaact 39
|||||||||||||||||||||||
Sbjct: 8 tttttccacagctttcttgaact 30
>RF00648;MIR396;AARH01001850.1/327743-327639 3694:Populus
trichocarpa
Length = 105
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 17 tttttccacagctttcttgaact 39
|||||||||||||||||||||||
Sbjct: 97 tttttccacagctttcttgaact 75
>RF00648;MIR396;AC209588.1/2779-2519 4081:Solanum lycopersicum
Length = 261
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tttttccacagctttcttgaact 39
|||||||||||||||||||||||
Sbjct: 8 tttttccacagctttcttgaact 30
>RF00648;MIR396;AP005056.2/134150-134304 39947:Oryza sativa
Japonica Group
Length = 155
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 20 ttccacagctttcttgaactgca 42
|||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactgca 33
>RF00648;MIR396;FM164183.1/100-235 3702:Arabidopsis thaliana
(thale cress)
Length = 136
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 18 ttttccacagctttcttgaact 39
||||||||||||||||||||||
Sbjct: 9 ttttccacagctttcttgaact 30
>RF00648;MIR396;AARH01007577.1/188194-188047 3694:Populus
trichocarpa
Length = 148
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 18 ttttccacagctttcttgaact 39
||||||||||||||||||||||
Sbjct: 9 ttttccacagctttcttgaact 30
>RF00648;MIR396;AARH01002977.1/33014-32858 3694:Populus
trichocarpa
Length = 157
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 18 ttttccacagctttcttgaact 39
||||||||||||||||||||||
Sbjct: 9 ttttccacagctttcttgaact 30
>RF00648;MIR396;AASG02001279.1/18109-18241 3988:Ricinus communis
(castor bean)
Length = 133
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 18 ttttccacagctttcttgaact 39
||||||||||||||||||||||
Sbjct: 9 ttttccacagctttcttgaact 30
>RF00648;MIR396;AC153121.15/48150-48253 3880:Medicago truncatula
(barrel medic)
Length = 104
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 18 ttttccacagctttcttgaact 39
||||||||||||||||||||||
Sbjct: 9 ttttccacagctttcttgaact 30
>RF00648;MIR396;AP010531.1/73143-73036 34305:Lotus japonicus
Length = 108
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 18 ttttccacagctttcttgaact 39
||||||||||||||||||||||
Sbjct: 9 ttttccacagctttcttgaact 30
>RF00648;MIR396;FJ647794.1/154-54 64478:Actinidia arguta
Length = 101
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 17 tttttccacagctttcttgaac 38
||||||||||||||||||||||
Sbjct: 93 tttttccacagctttcttgaac 72
>RF00648;MIR396;CAAP02000554.1/84783-84895 29760:Vitis vinifera
Length = 113
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 18 ttttccacagctttcttgaact 39
||||||||||||||||||||||
Sbjct: 9 ttttccacagctttcttgaact 30
>RF00648;MIR396;AM489352.2/13768-13664 29760:Vitis vinifera
Length = 105
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 18 ttttccacagctttcttgaact 39
||||||||||||||||||||||
Sbjct: 9 ttttccacagctttcttgaact 30
>RF00648;MIR396;FJ085642.1/369-262 3352:Pinus taeda (loblolly
pine)
Length = 108
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 18 ttttccacagctttcttgaact 39
||||||||||||||||||||||
Sbjct: 9 ttttccacagctttcttgaact 30
