miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00704;MIR397;EF148834.1/45-164 3695:Populus trichocarpa x
          Populus deltoides
          Length = 120

 Score = 50.1 bits (25), Expect = 9e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 16 catcattgagtgcagcgttgatgaa 40
          |||||||||||||||||||||||||
Sbjct: 9  catcattgagtgcagcgttgatgaa 33



 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 87  tttcaccagcgctgcactcgatcatgttttt 117
           |||||||||||||||| || |||||||||||
Sbjct: 89  tttcaccagcgctgcattcaatcatgttttt 119




>RF00704;MIR397;CAAP02007812.1/4570-4691 29760:Vitis vinifera
          Length = 122

 Score = 50.1 bits (25), Expect = 9e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 16 catcattgagtgcagcgttgatgaa 40
          |||||||||||||||||||||||||
Sbjct: 9  catcattgagtgcagcgttgatgaa 33




>RF00704;MIR397;AP003766.3/37038-37149 39947:Oryza sativa Japonica
          Group
          Length = 112

 Score = 50.1 bits (25), Expect = 9e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 16 catcattgagtgcagcgttgatgaa 40
          |||||||||||||||||||||||||
Sbjct: 9  catcattgagtgcagcgttgatgaa 33




>RF00704;MIR397;ABIM01007603.1/10199-10104 3649:Carica papaya
          (papaya)
          Length = 96

 Score = 48.1 bits (24), Expect = 4e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 16 catcattgagtgcagcgttgatga 39
          ||||||||||||||||||||||||
Sbjct: 9  catcattgagtgcagcgttgatga 32




>RF00704;MIR397;ABXC01002436.1/11519-11410 4558:Sorghum bicolor
          (sorghum)
          Length = 110

 Score = 48.1 bits (24), Expect = 4e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 16 catcattgagtgcagcgttgatga 39
          ||||||||||||||||||||||||
Sbjct: 9  catcattgagtgcagcgttgatga 32




>RF00704;MIR397;AC189186.2/40150-40047 51351:Brassica rapa subsp.
          pekinensis
          Length = 104

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 16 catcattgagtgcagcgttgatg 38
          |||||||||||||||||||||||
Sbjct: 9  catcattgagtgcagcgttgatg 31




>RF00704;MIR397;AC012392.1/95144-95040 3702:Arabidopsis thaliana
          (thale cress)
          Length = 105

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 16 catcattgagtgcagcgttgatg 38
          |||||||||||||||||||||||
Sbjct: 9  catcattgagtgcagcgttgatg 31




>RF00704;MIR397;AARH01002083.1/50091-50204 3694:Populus
          trichocarpa
          Length = 114

 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 19 cattgagtgcagcgttgatgaa 40
          ||||||||||||||||||||||
Sbjct: 12 cattgagtgcagcgttgatgaa 33