miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00445;mir-399;CAAP02003948.1/3813-3690 29760:Vitis vinifera
Length = 124
Score = 50.1 bits (25), Expect = 1e-05
Identities = 35/37 (94%), Gaps = 1/37 (2%)
Strand = Plus / Plus
Query: 17 tagttgtagggcttctctcctt-tggcaggtgatggc 52
|||||||||||||||||||||| ||||||| ||||||
Sbjct: 5 tagttgtagggcttctctccttctggcaggagatggc 41
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 117 caatgacctgccaaaggagagttgccct 144
|||||||| |||||||||||||||||||
Sbjct: 86 caatgacccgccaaaggagagttgccct 113
>RF00445;mir-399;DQ063659.1/70-185 3702:Arabidopsis thaliana (thale
cress)
Length = 116
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 125 tgccaaaggagagttgccctataactgcttc 155
|||||||||||||||||||| | ||||||||
Sbjct: 85 tgccaaaggagagttgccctgtcactgcttc 115
>RF00445;mir-399;ABXC01004408.1/291013-291114 4558:Sorghum bicolor
(sorghum)
Length = 102
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 124 ctgccaaaggagagttgccctataac 149
||||||||||||||||||||| ||||
Sbjct: 71 ctgccaaaggagagttgccctgtaac 96
