miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00073;mir-156;AARH01003139.1/114039-113955 3694:Populus
trichocarpa
Length = 85
Score = 127 bits (64), Expect = 3e-29
Identities = 79/84 (94%)
Strand = Plus / Plus
Query: 11 tgacagaagagagtgagcacacagggtactttcttgcatgacgttcatgcttgaagcttt 70
|||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||
Sbjct: 2 tgacagaagagagtgagcacacagggtactttcttgcatgacatccatgcttgaaacttt 61
Query: 71 gcgtgcccaccctctatctgtcac 94
|||||| ||| |||||||||||||
Sbjct: 62 gcgtgctcactctctatctgtcac 85
>RF00073;mir-156;AASG02007740.1/7202-7285 3988:Ricinus communis
(castor bean)
Length = 84
Score = 87.7 bits (44), Expect = 3e-17
Identities = 75/84 (89%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 11 tgacagaagagagtgagcacacagggtactttcttgcatgacgttcatgcttgaagcttt 70
||||||||||||||||||||||| ||||||||| ||||||| |||||||| ||||| ||
Sbjct: 2 tgacagaagagagtgagcacacatggtactttcctgcatga-attcatgctcgaagcctt 60
Query: 71 gcgtgcccaccctctatctgtcac 94
|||||| || |||||||||||||
Sbjct: 61 gcgtgcttactctctatctgtcac 84
>RF00073;mir-156;AM455203.2/879-962 29760:Vitis vinifera
Length = 84
Score = 77.8 bits (39), Expect = 2e-14
Identities = 73/83 (87%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 11 tgacagaagagagtgagcacacagggtactttcttgcatgacgttcatgcttgaagcttt 70
||||||||||||||||||||||| ||| |||||||||| || ||||||||||||| |
Sbjct: 2 tgacagaagagagtgagcacacatggtctgttcttgcatgg-gtccatgcttgaagctct 60
Query: 71 gcgtgcccaccctctatctgtca 93
|||||| ||| ||||||||||||
Sbjct: 61 gcgtgctcactctctatctgtca 83
>RF00073;mir-156;AC152551.33/14978-14893 3880:Medicago truncatula
(barrel medic)
Length = 86
Score = 73.8 bits (37), Expect = 4e-13
Identities = 74/85 (87%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 11 tgacagaagagagtgagcacacagggtactttcttgcatgacg-ttcatgcttgaagctt 69
||||||||||||||||||||||| ||||||||| || |||| | ||||| || ||||||
Sbjct: 2 tgacagaagagagtgagcacacatggtactttcgtgtatgatgtttcattctcgaagcta 61
Query: 70 tgcgtgcccaccctctatctgtcac 94
|| |||| ||| |||||||||||||
Sbjct: 62 tgtgtgctcactctctatctgtcac 86
>RF00073;mir-156;AP010362.1/32796-32877 34305:Lotus japonicus
Length = 82
Score = 67.9 bits (34), Expect = 2e-11
Identities = 72/84 (85%), Gaps = 3/84 (3%)
Strand = Plus / Plus
Query: 11 tgacagaagagagtgagcacacagggtactttcttgcatgacgttcatgcttgaagcttt 70
||||||||||||||||||||||| ||| ||||||||| | ||||||||||||| | |
Sbjct: 2 tgacagaagagagtgagcacacatggtgctttcttgc---agtttcatgcttgaagttat 58
Query: 71 gcgtgcccaccctctatctgtcac 94
|||| |||||||||||||||||
Sbjct: 59 atgtgctcaccctctatctgtcac 82
>RF00073;mir-156;EU004241.2/110-202 4529:Oryza rufipogon
Length = 93
Score = 58.0 bits (29), Expect = 2e-08
Identities = 39/41 (95%), Gaps = 1/41 (2%)
Strand = Plus / Plus
Query: 11 tgacagaagagagtgagcacacagggt-actttcttgcatg 50
||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 2 tgacagaagagagtgagcacacatggtgactttcttgcatg 42
>RF00073;mir-156;EU548379.1/158-255 3702:Arabidopsis thaliana
(thale cress)
Length = 98
Score = 56.0 bits (28), Expect = 9e-08
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 11 tgacagaagagagtgagcacacagggtactttcttgcatg 50
||||||||||||||||||||||| ||| |||||||||||
Sbjct: 2 tgacagaagagagtgagcacacatggtggtttcttgcatg 41
>RF00073;mir-156;AP009602.1/6441-6354 4081:Solanum lycopersicum
Length = 88
Score = 56.0 bits (28), Expect = 9e-08
Identities = 74/87 (85%), Gaps = 3/87 (3%)
Strand = Plus / Plus
Query: 11 tgacagaagagagtgagcacacagggtactttcttgcatgacgtt--catgcttgaagct 68
||||||||||||||||||||| | ||| |||| |||||| ||| |||||||||||||
Sbjct: 2 tgacagaagagagtgagcacatatggtcttttcaagcatgatgtttacatgcttgaagct 61
Query: 69 ttgcgtgcccac-cctctatctgtcac 94
||||||| ||| |||||||||||||
Sbjct: 62 atgcgtgctcacttctctatctgtcac 88
>RF00073;mir-156;EU004275.2/501-588 39946:Oryza sativa Indica
Group
Length = 88
Score = 54.0 bits (27), Expect = 4e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 11 tgacagaagagagtgagcacacagggtactttctt 45
||||||||||||||||||||||| ||| |||||||
Sbjct: 2 tgacagaagagagtgagcacacacggtgctttctt 36
>RF00073;mir-156;AP009515.1/86721-86633 4081:Solanum lycopersicum
Length = 89
Score = 52.0 bits (26), Expect = 1e-06
Identities = 74/88 (84%), Gaps = 4/88 (4%)
Strand = Plus / Plus
Query: 11 tgacagaagagagtgagcacacagggtactttcttgcatgacgtt---catgcttgaagc 67
||||||||||||||||||||||| ||| ||||| |||||| ||| |||||||||| |
Sbjct: 2 tgacagaagagagtgagcacacatggtgttttctagcatgatgttttacatgcttgaaac 61
Query: 68 tttgcgtgcccac-cctctatctgtcac 94
| || |||| ||| |||||||||||||
Sbjct: 62 tatgtgtgctcactgctctatctgtcac 89
>RF00073;mir-156;ABIM01019325.1/182-263 3649:Carica papaya
(papaya)
Length = 82
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 10 ttgacagaagagagtgagcacacag 34
|||||||||||||||||||||||||
Sbjct: 1 ttgacagaagagagtgagcacacag 25
>RF00073;mir-156;AASG02001561.1/34616-34535 3988:Ricinus communis
(castor bean)
Length = 82
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 10 ttgacagaagagagtgagcacacag 34
|||||||||||||||||||||||||
Sbjct: 1 ttgacagaagagagtgagcacacag 25
>RF00073;mir-156;AP009602.1/17046-16952 4081:Solanum lycopersicum
Length = 95
Score = 50.1 bits (25), Expect = 5e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 15 agaagagagtgagcacacagggtactttcttgcatga 51
||||||||||||||||||| ||| ||||||||||||
Sbjct: 6 agaagagagtgagcacacatggtgttttcttgcatga 42
>RF00073;mir-156;ABXC01001718.1/172900-172815 4558:Sorghum bicolor
(sorghum)
Length = 86
Score = 50.1 bits (25), Expect = 5e-06
Identities = 71/85 (83%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 10 ttgacagaagagagtgagcacacagggtactttctt-gcatgacgttcatgcttgaagct 68
|||||||||||||||||||||||| ||| |||||| |||||| |||| | | ||||
Sbjct: 1 ttgacagaagagagtgagcacacacggtggtttcttagcatgagtgccatgttgggagct 60
Query: 69 ttgcgtgcccaccctctatctgtca 93
||||||| ||| ||||||||||||
Sbjct: 61 gtgcgtgctcactctctatctgtca 85
>RF00073;mir-156;AB108111.1/202-100 15957:Phleum pratense (timothy
grass)
Length = 103
Score = 50.1 bits (25), Expect = 5e-06
Identities = 38/41 (92%), Gaps = 1/41 (2%)
Strand = Plus / Plus
Query: 11 tgacagaagagagtgagcacacagggtac-tttcttgcatg 50
||||||||||||||||||||||| ||| | |||||||||||
Sbjct: 2 tgacagaagagagtgagcacacatggtgcttttcttgcatg 42
>RF00073;mir-156;AL391222.1/7873-7786 3702:Arabidopsis thaliana
(thale cress)
Length = 88
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 ttgacagaagagagtgagcacaca 33
||||||||||||||||||||||||
Sbjct: 1 ttgacagaagagagtgagcacaca 24
>RF00073;mir-156;EU548405.1/118-209 3702:Arabidopsis thaliana
(thale cress)
Length = 92
Score = 48.1 bits (24), Expect = 2e-05
Identities = 37/40 (92%), Gaps = 1/40 (2%)
Strand = Plus / Plus
Query: 11 tgacagaagagagtgagcacacagggt-actttcttgcat 49
||||||||||||||||||||||| ||| |||||||||||
Sbjct: 2 tgacagaagagagtgagcacacatggtggctttcttgcat 41
>RF00073;mir-156;AASG02002418.1/21340-21254 3988:Ricinus communis
(castor bean)
Length = 87
Score = 48.1 bits (24), Expect = 2e-05
Identities = 36/39 (92%), Gaps = 2/39 (5%)
Strand = Plus / Plus
Query: 11 tgacagaagagagtgagcacacagggtactttcttgcat 49
||||||||||||||||||||||| ||| ||||||||||
Sbjct: 2 tgacagaagagagtgagcacacatggt--tttcttgcat 38
>RF00073;mir-156;AM456699.2/13257-13176 29760:Vitis vinifera
Length = 82
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 tgacagaagagagtgagcacacag 34
||||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacacag 25
>RF00073;mir-156;ABXC01004937.1/5197-5315 4558:Sorghum bicolor
(sorghum)
Length = 119
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 tgacagaagagagtgagcacacag 34
||||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacacag 25
>RF00073;mir-156;AP005429.3/80050-80161 39947:Oryza sativa
Japonica Group
Length = 112
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 tgacagaagagagtgagcacacag 34
||||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacacag 25
>RF00073;mir-156;AAAA02027469.1/16633-16520 39946:Oryza sativa
Indica Group
Length = 114
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 tgacagaagagagtgagcacacag 34
||||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacacag 25
>RF00073;mir-156;EU548281.1/284-201 3702:Arabidopsis thaliana
(thale cress)
Length = 84
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgacagaagagagtgagcacaca 33
|||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacaca 24
>RF00073;mir-156;AARH01007531.1/19950-19866 3694:Populus
trichocarpa
Length = 85
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgacagaagagagtgagcacaca 33
|||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacaca 24
>RF00073;mir-156;AARH01003087.1/284432-284516 3694:Populus
trichocarpa
Length = 85
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgacagaagagagtgagcacaca 33
|||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacaca 24
>RF00073;mir-156;AP010300.1/44116-44196 34305:Lotus japonicus
Length = 81
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 ttgacagaagagagtgagcacac 32
|||||||||||||||||||||||
Sbjct: 1 ttgacagaagagagtgagcacac 23
>RF00073;mir-156;ABXC01002449.1/27576-27491 4558:Sorghum bicolor
(sorghum)
Length = 86
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 ttgacagaagagagtgagcacac 32
|||||||||||||||||||||||
Sbjct: 1 ttgacagaagagagtgagcacac 23
>RF00073;mir-156;AK073452.1/342-427 39947:Oryza sativa Japonica
Group
Length = 86
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 ttgacagaagagagtgagcacac 32
|||||||||||||||||||||||
Sbjct: 1 ttgacagaagagagtgagcacac 23
>RF00073;mir-156;CU406049.1/183-270 4529:Oryza rufipogon
Length = 88
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 ttgacagaagagagtgagcacac 32
|||||||||||||||||||||||
Sbjct: 1 ttgacagaagagagtgagcacac 23
>RF00073;mir-156;ABIM01011291.1/8261-8180 3649:Carica papaya
(papaya)
Length = 82
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgacagaagagagtgagcacac 32
||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacac 23
>RF00073;mir-156;AC005917.3/7348-7264 3702:Arabidopsis thaliana
(thale cress)
Length = 85
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 gacagaagagagtgagcacaca 33
||||||||||||||||||||||
Sbjct: 3 gacagaagagagtgagcacaca 24
>RF00073;mir-156;AASG02015394.1/3647-3565 3988:Ricinus communis
(castor bean)
Length = 83
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgacagaagagagtgagcacac 32
||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacac 23
>RF00073;mir-156;EF692358.1/99-183 3899:Trifolium repens (white
clover)
Length = 85
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 ttgacagaagagagtgagcaca 31
||||||||||||||||||||||
Sbjct: 1 ttgacagaagagagtgagcaca 22
>RF00073;mir-156;AC159537.24/87146-87063 3880:Medicago truncatula
(barrel medic)
Length = 84
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 ttgacagaagagagtgagcaca 31
||||||||||||||||||||||
Sbjct: 1 ttgacagaagagagtgagcaca 22
>RF00073;mir-156;CU019603.9/39808-39728 3880:Medicago truncatula
(barrel medic)
Length = 81
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 ttgacagaagagagtgagcaca 31
||||||||||||||||||||||
Sbjct: 1 ttgacagaagagagtgagcaca 22
>RF00073;mir-156;ABXC01004344.1/59682-59592 4558:Sorghum bicolor
(sorghum)
Length = 91
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgacagaagagagtgagcacac 32
||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacac 23
>RF00073;mir-156;ABXC01002848.1/26684-26598 4558:Sorghum bicolor
(sorghum)
Length = 87
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgacagaagagagtgagcacac 32
||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacac 23
>RF00073;mir-156;AAAA02006911.1/103-14 39946:Oryza sativa Indica
Group
Length = 90
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgacagaagagagtgagcacac 32
||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacac 23
>RF00073;mir-156;AP005286.3/98217-98130 39947:Oryza sativa
Japonica Group
Length = 88
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgacagaagagagtgagcacac 32
||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacac 23
>RF00073;mir-156;AP003332.4/36088-35998 39947:Oryza sativa
Japonica Group
Length = 91
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgacagaagagagtgagcacac 32
||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacac 23
