miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;AY728395.1/6-170 3694:Populus trichocarpa
Length = 165
Score = 285 bits (144), Expect = 1e-76
Identities = 158/165 (95%)
Strand = Plus / Plus
Query: 13 gagctccttgaagtccaatagaagctcctgctgggtagatcgagctgctgagctatgaat 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gagctccttgaagtccaatagaagctcctgctgggtagatcgagctgctgagctatgaat 60
Query: 73 cccacagccctatcaccatcagtcattttgatgggcctgcggcttgcatatctcaggagc 132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cccacagccctatcaccatcagtcattttgatgggcctgcggcttgcatatctcaggagc 120
Query: 133 tttattacctaatgttagatcnnnnnnnggattgaagggagctct 177
||||||||||||||||||||| |||||||||||||||||
Sbjct: 121 tttattacctaatgttagatctttttttggattgaagggagctct 165
>RF00638;MIR159;AASG02012489.1/1166-1359 3988:Ricinus communis
(castor bean)
Length = 194
Score = 109 bits (55), Expect = 1e-23
Identities = 73/79 (92%)
Strand = Plus / Plus
Query: 7 ggagtggagctccttgaagtccaatagaagctcctgctgggtagatcgagctgctgagct 66
|||||||||||||||||||||||||||| | || || ||||||||| |||||||||||||
Sbjct: 7 ggagtggagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagct 66
Query: 67 atgaatcccacagccctat 85
||| |||||||||||||||
Sbjct: 67 atggatcccacagccctat 85
>RF00638;MIR159;AARH01017144.1/4716-4901 3694:Populus trichocarpa
Length = 186
Score = 107 bits (54), Expect = 5e-23
Identities = 151/182 (82%), Gaps = 4/182 (2%)
Strand = Plus / Plus
Query: 1 gattatggagtggagctccttgaagtccaatagaagctcctgctgggtagatcgagctgc 60
||||| |||||||||||||||||||||||||||| | || |||||||||||| ||||||
Sbjct: 1 gattagggagtggagctccttgaagtccaatagaggttcttgctgggtagattaagctgc 60
Query: 61 tgagctatgaatcccacagccctatcaccatcagtcattttgatgggcctgcggcttgca 120
| ||||||| |||| |||| |||||| |||| | ||| || |||||||||||
Sbjct: 61 taagctatggatcc-acagtcctatct--atcaaccgaag-gataggtttgcggcttgca 116
Query: 121 tatctcaggagctttattacctaatgttagatcnnnnnnnggattgaagggagctctaaa 180
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 117 tatctcaggagctttattgcctaatgttagatccctttttggattgaagggagctctaaa 176
Query: 181 cc 182
||
Sbjct: 177 cc 178
>RF00638;MIR159;CAAP02007000.1/8870-9063 29760:Vitis vinifera
Length = 194
Score = 97.6 bits (49), Expect = 5e-20
Identities = 73/81 (90%)
Strand = Plus / Plus
Query: 6 tggagtggagctccttgaagtccaatagaagctcctgctgggtagatcgagctgctgagc 65
||||||||||||||||||||||||||||| | || | |||||||||| ||||||||||
Sbjct: 6 tggagtggagctccttgaagtccaatagagggtcttactgggtagattgagctgctgact 65
Query: 66 tatgaatcccacagccctatc 86
|||| ||||||||||||||||
Sbjct: 66 tatggatcccacagccctatc 86
>RF00638;MIR159;ABIM01001657.1/35314-35507 3649:Carica papaya
(papaya)
Length = 194
Score = 63.9 bits (32), Expect = 7e-10
Identities = 62/72 (86%)
Strand = Plus / Plus
Query: 13 gagctccttgaagtccaatagaagctcctgctgggtagatcgagctgctgagctatgaat 72
|||||||||||||||||||||| | | ||| |||| ||| ||||||| |||||||| ||
Sbjct: 13 gagctccttgaagtccaatagaggattttgcagggttgattgagctgccgagctatggat 72
Query: 73 cccacagcccta 84
|||||||||||
Sbjct: 73 tccacagcccta 84
>RF00638;MIR159;AC235792.1/25881-25682 4081:Solanum lycopersicum
Length = 200
Score = 63.9 bits (32), Expect = 7e-10
Identities = 68/80 (85%)
Strand = Plus / Plus
Query: 7 ggagtggagctccttgaagtccaatagaagctcctgctgggtagatcgagctgctgagct 66
|||||||||||||||||||||||| ||||| || | || ||||| |||||||||| ||
Sbjct: 7 ggagtggagctccttgaagtccaacagaagatctaacaggttagattgagctgctgacct 66
Query: 67 atgaatcccacagccctatc 86
||| || || ||||||||||
Sbjct: 67 atggattcctcagccctatc 86
