miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;AARH01006065.1/463210-463415 3694:Populus
trichocarpa
Length = 206
Score = 398 bits (201), Expect = e-110
Identities = 201/201 (100%)
Strand = Plus / Plus
Query: 1 gaggctcaatggagctctccccactccatgcctgaaaggagttcgatggtagaccatggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 gaggctcaatggagctctccccactccatgcctgaaaggagttcgatggtagaccatggc 61
Query: 61 tgctagttcatgaatacccttgggtgcgcagaattagcaacggtgcaggcgaagttgcgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 tgctagttcatgaatacccttgggtgcgcagaattagcaacggtgcaggcgaagttgcgc 121
Query: 121 aggctaagggtctgcatgacctaggagacgtggttaccctgaccctttttgtattggagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 aggctaagggtctgcatgacctaggagacgtggttaccctgaccctttttgtattggagt 181
Query: 181 gaagggagctcgatggtcttt 201
|||||||||||||||||||||
Sbjct: 182 gaagggagctcgatggtcttt 202
>RF00638;MIR159;AASG02000051.1/79825-80023 3988:Ricinus communis
(castor bean)
Length = 199
Score = 89.7 bits (45), Expect = 1e-17
Identities = 69/77 (89%)
Strand = Plus / Plus
Query: 115 ttgcgcaggctaagggtctgcatgacctaggagacgtggttaccctgaccctttttgtat 174
||||||||||||||||| |||||||||| ||||||||||||||| | | ||||| |||
Sbjct: 109 ttgcgcaggctaagggtttgcatgacctgggagacgtggttaccttcttcttttttatat 168
Query: 175 tggagtgaagggagctc 191
|||||||||||||||||
Sbjct: 169 tggagtgaagggagctc 185
>RF00638;MIR159;ABIM01022236.1/33140-32940 3649:Carica papaya
(papaya)
Length = 201
Score = 77.8 bits (39), Expect = 5e-14
Identities = 119/146 (81%), Gaps = 6/146 (4%)
Strand = Plus / Plus
Query: 51 agaccatggctgctagttcatgaatacccttgggtgcgcagaattagcaacggtgcaggc 110
|||||||||||||||||||||||||| || ||| ||||||| || ||| | | || ||
Sbjct: 53 agaccatggctgctagttcatgaatatccatggctgcgcaggataagcgatgttggcgg- 111
Query: 111 gaagttgcgcaggctaagggtctgcatgacctaggagacgtggttaccctgacccttttt 170
|||||||||||||||| ||||||| | ||||||| ||||| | ||| | ||||
Sbjct: 112 -----tgcgcaggctaagggtttgcatgagccaggagacatggttcctttgatctttttg 166
Query: 171 gtattggagtgaagggagctcgatgg 196
||||||||||||||||||||| ||||
Sbjct: 167 gtattggagtgaagggagctctatgg 192
>RF00638;MIR159;AARH01006065.1/468133-468327 3694:Populus
trichocarpa
Length = 195
Score = 71.9 bits (36), Expect = 3e-12
Identities = 66/76 (86%)
Strand = Plus / Plus
Query: 116 tgcgcaggctaagggtctgcatgacctaggagacgtggttaccctgaccctttttgtatt 175
||||||||||||||||||||||| |||||||| |||||| || ||| | |||| || ||
Sbjct: 106 tgcgcaggctaagggtctgcatgtgctaggagatgtggttgccttgatctttttggtctt 165
Query: 176 ggagtgaagggagctc 191
|| |||||||||||||
Sbjct: 166 ggggtgaagggagctc 181
>RF00638;MIR159;AASG02000051.1/86758-86979 3988:Ricinus communis
(castor bean)
Length = 222
Score = 65.9 bits (33), Expect = 2e-10
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 55 catggctgctagttcatgaatacccttgggtgcgcag 91
||||||||||||||||||||||||||| |||||||||
Sbjct: 57 catggctgctagttcatgaataccctttggtgcgcag 93
>RF00638;MIR159;CAAP02000074.1/110075-110270 29760:Vitis vinifera
Length = 196
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 171 gtattggagtgaagggagctcgatggt 197
||||||||||||||||||||| |||||
Sbjct: 162 gtattggagtgaagggagctctatggt 188
