miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00247;mir-160;AARH01000886.1/36098-36187 3694:Populus
trichocarpa
Length = 90
Score = 178 bits (90), Expect = 9e-45
Identities = 90/90 (100%)
Strand = Plus / Plus
Query: 8 ttatgcctggctccctgtatgccacaagcaaagaccaatcttttgttttagattggctgt 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttatgcctggctccctgtatgccacaagcaaagaccaatcttttgttttagattggctgt 60
Query: 68 tgccggtggcgtgcgaggagccaagcatac 97
||||||||||||||||||||||||||||||
Sbjct: 61 tgccggtggcgtgcgaggagccaagcatac 90
>RF00247;mir-160;AY728424.1/1-89 3694:Populus trichocarpa
Length = 89
Score = 117 bits (59), Expect = 3e-26
Identities = 84/90 (93%), Gaps = 3/90 (3%)
Strand = Plus / Plus
Query: 9 tatgcctggctccctgtatgccacaagcaaagaccaatctttt--gttttagattggctg 66
||||||||||||||||||||||||| |||||||||||||| || || ||||||||||||
Sbjct: 1 tatgcctggctccctgtatgccaca-gcaaagaccaatctcttctgtcttagattggctg 59
Query: 67 ttgccggtggcgtgcgaggagccaagcata 96
|||||||||||||||||||||||||||||
Sbjct: 60 ctgccggtggcgtgcgaggagccaagcata 89
>RF00247;mir-160;ABIM01022486.1/4654-4741 3649:Carica papaya
(papaya)
Length = 88
Score = 73.8 bits (37), Expect = 4e-13
Identities = 76/88 (86%), Gaps = 2/88 (2%)
Strand = Plus / Plus
Query: 8 ttatgcctggctccctgtatgccacaagcaaagaccaatcttttgttttagattggctgt 67
|||||||||||||||||||||||||||||| | || |||||| | ||||||| |
Sbjct: 1 ttatgcctggctccctgtatgccacaagcacaacccgatctttccgat--gattggccgg 58
Query: 68 tgccggtggcgtgcgaggagccaagcat 95
||||||||||||||||||||||||||||
Sbjct: 59 tgccggtggcgtgcgaggagccaagcat 86
>RF00247;mir-160;AASG02024242.1/1209-1298 3988:Ricinus communis
(castor bean)
Length = 90
Score = 71.9 bits (36), Expect = 2e-12
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 58 gattggctgttgccggtggcgtgcgaggagccaagcatac 97
|||||||| |||||||||||||||||||||||||||||||
Sbjct: 51 gattggctattgccggtggcgtgcgaggagccaagcatac 90
>RF00247;mir-160;AC183492.1/98297-98383 3712:Brassica oleracea
Length = 87
Score = 54.0 bits (27), Expect = 4e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 10 atgcctggctccctgtatgccacaagcaaagaccaatct 48
|||||||||||||||||||||||||| ||| ||| ||||
Sbjct: 3 atgcctggctccctgtatgccacaagtaaataccgatct 41
>RF00247;mir-160;CAAP02006197.1/486-575 29760:Vitis vinifera
Length = 90
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 67 ttgccggtggcgtgcgaggagccaagcatac 97
|||| ||||||||||||||||||||||||||
Sbjct: 60 ttgcgggtggcgtgcgaggagccaagcatac 90
>RF00247;mir-160;AC189245.2/87285-87372 51351:Brassica rapa subsp.
pekinensis
Length = 88
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 10 atgcctggctccctgtatgccacaag 35
||||||||||||||||||||||||||
Sbjct: 3 atgcctggctccctgtatgccacaag 28
>RF00247;mir-160;DQ455766.1/101-12 169985:Oenocarpus bataua
Length = 90
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 72 ggtggcgtgcgaggagccaagcatac 97
||||||||||||||||||||||||||
Sbjct: 65 ggtggcgtgcgaggagccaagcatac 90
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccac 32
||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccac 25
>RF00247;mir-160;EU548646.1/366-280 3702:Arabidopsis thaliana
(thale cress)
Length = 87
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 8 ttatgcctggctccctgtatgccac 32
|||||||||||||||||||||||||
Sbjct: 1 ttatgcctggctccctgtatgccac 25
>RF00247;mir-160;Z97344.2/54320-54406 3702:Arabidopsis thaliana
(thale cress)
Length = 87
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccacaag 35
|||||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccacaag 28
>RF00247;mir-160;EU945131.1/219-303 4577:Zea mays
Length = 85
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 9 tatgcctggctccctgtatgccac 32
||||||||||||||||||||||||
Sbjct: 2 tatgcctggctccctgtatgccac 25
>RF00247;mir-160;ABXC01000057.1/79229-79124 4558:Sorghum bicolor
(sorghum)
Length = 106
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 9 tatgcctggctccctgtatgccac 32
||||||||||||||||||||||||
Sbjct: 2 tatgcctggctccctgtatgccac 25
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 74 tggcgtgcgaggagccaagcat 95
||||||||||||||||||||||
Sbjct: 83 tggcgtgcgaggagccaagcat 104
>RF00247;mir-160;ABXC01000819.1/394312-394212 4558:Sorghum bicolor
(sorghum)
Length = 101
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 9 tatgcctggctccctgtatgccac 32
||||||||||||||||||||||||
Sbjct: 2 tatgcctggctccctgtatgccac 25
>RF00247;mir-160;AAAA02011132.1/25365-25500 39946:Oryza sativa
Indica Group
Length = 136
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 9 tatgcctggctccctgtatgccac 32
||||||||||||||||||||||||
Sbjct: 2 tatgcctggctccctgtatgccac 25
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 74 tggcgtgcgaggagccaagcat 95
||||||||||||||||||||||
Sbjct: 113 tggcgtgcgaggagccaagcat 134
>RF00247;mir-160;EU548617.1/275-359 3702:Arabidopsis thaliana
(thale cress)
Length = 85
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tatgcctggctccctgtatgcca 31
|||||||||||||||||||||||
Sbjct: 2 tatgcctggctccctgtatgcca 24
>RF00247;mir-160;AC196190.2/61996-61908 4081:Solanum lycopersicum
Length = 89
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tatgcctggctccctgtatgcca 31
|||||||||||||||||||||||
Sbjct: 2 tatgcctggctccctgtatgcca 24
>RF00247;mir-160;CAAP02000343.1/40092-40007 29760:Vitis vinifera
Length = 86
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tatgcctggctccctgtatgcca 31
|||||||||||||||||||||||
Sbjct: 2 tatgcctggctccctgtatgcca 24
>RF00247;mir-160;FM878703.1/301-387 213592:Musa acuminata subsp.
burmannicoides
Length = 87
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccaca 33
|||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccaca 26
>RF00247;mir-160;EU974767.1/328-419 4577:Zea mays
Length = 92
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccaca 33
|||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccaca 26
>RF00247;mir-160;EU975926.1/304-390 4577:Zea mays
Length = 87
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccaca 33
|||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccaca 26
>RF00247;mir-160;ABXC01002436.1/220577-220488 4558:Sorghum bicolor
(sorghum)
Length = 90
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccaca 33
|||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccaca 26
>RF00247;mir-160;AAAA02005231.1/55127-55040 39946:Oryza sativa
Indica Group
Length = 88
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccaca 33
|||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccaca 26
>RF00247;mir-160;ABIM01017407.1/6156-6071 3649:Carica papaya
(papaya)
Length = 86
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 atgcctggctccctgtatgcca 31
||||||||||||||||||||||
Sbjct: 3 atgcctggctccctgtatgcca 24
>RF00247;mir-160;AASG02000717.1/28729-28642 3988:Ricinus communis
(castor bean)
Length = 88
Score = 44.1 bits (22), Expect = 3e-04
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccacaagcaaagaccaatct 48
||||||| ||| ||||||||||||||| || |||||||
Sbjct: 4 tgcctggttccttgtatgccacaagcacagtccaatct 41
>RF00247;mir-160;CAAP02000723.1/67959-67874 29760:Vitis vinifera
Length = 86
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 atgcctggctccctgtatgcca 31
||||||||||||||||||||||
Sbjct: 3 atgcctggctccctgtatgcca 24
>RF00247;mir-160;ABXC01004530.1/55208-55296 4558:Sorghum bicolor
(sorghum)
Length = 89
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccac 32
||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccac 25
>RF00247;mir-160;EU798771.1/193-98 58934:Zizania latifolia
Length = 96
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccac 32
||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccac 25
>RF00247;mir-160;AAAA02022910.1/14752-14660 39946:Oryza sativa
Indica Group
Length = 93
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccac 32
||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccac 25
>RF00247;mir-160;AAAA02020747.1/14884-14971 39946:Oryza sativa
Indica Group
Length = 88
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccac 32
||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccac 25
>RF00247;mir-160;AY551220.1/23-122 4530:Oryza sativa (rice)
Length = 100
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 tatgcctggctccctgtatgcc 30
||||||||||||||||||||||
Sbjct: 2 tatgcctggctccctgtatgcc 23
>RF00247;mir-160;ABEU01014597.1/43590-43504 145481:Physcomitrella
patens subsp. patens
Length = 87
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccac 32
||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccac 25
>RF00247;mir-160;ABEU01007064.1/27442-27356 145481:Physcomitrella
patens subsp. patens
Length = 87
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccac 32
||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccac 25
