miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00640;MIR167_1;AARH01001059.1/160212-160110 3694:Populus
trichocarpa
Length = 103
Score = 190 bits (96), Expect = 2e-48
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 1 agggaaaaagtgaagctgccagcatgatctatctttggttagagaaagaaaggactaacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 agggaaaaagtgaagctgccagcatgatctatctttggttagagaaagaaaggactaacc 63
Query: 61 ctagctaggtcatgctgtgacagcctcactccttcc 96
||||||||||||||||||||||||||||||||||||
Sbjct: 64 ctagctaggtcatgctgtgacagcctcactccttcc 99
>RF00640;MIR167_1;AARH01033933.1/298-187 3694:Populus trichocarpa
Length = 112
Score = 113 bits (57), Expect = 4e-25
Identities = 92/105 (87%), Gaps = 9/105 (8%)
Strand = Plus / Plus
Query: 1 agggaaaaagtgaagctgccagcatgatctatctttggttagagaa---------agaaa 51
|||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 4 agggaaaaggtgaagctgccagcatgatctatctttggttagagaaggatagaagcgaaa 63
Query: 52 ggactaaccctagctaggtcatgctgtgacagcctcactccttcc 96
| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 64 gaactaaccctagctaggtcatgctctgacagcctcactccttcc 108
>RF00640;MIR167_1;AP006429.1/12775-12654 34305:Lotus japonicus
Length = 122
Score = 89.7 bits (45), Expect = 6e-18
Identities = 48/49 (97%)
Strand = Plus / Plus
Query: 1 agggaaaaagtgaagctgccagcatgatctatctttggttagagaaaga 49
||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 4 agggaaaaagtgaagctgccagcatgatctagctttggttagagaaaga 52
Score = 60.0 bits (30), Expect = 5e-09
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 55 ctaaccctagctaggtcatgctgtgacagcctcactccttcc 96
|||||||| ||||||||||||| ||||||||||||||||||
Sbjct: 77 ctaaccctgactaggtcatgctgcgacagcctcactccttcc 118
>RF00640;MIR167_1;AASG02000565.1/57130-57272 3988:Ricinus communis
(castor bean)
Length = 143
Score = 75.8 bits (38), Expect = 9e-14
Identities = 41/42 (97%)
Strand = Plus / Plus
Query: 55 ctaaccctagctaggtcatgctgtgacagcctcactccttcc 96
|||||||||||||||||||||| |||||||||||||||||||
Sbjct: 98 ctaaccctagctaggtcatgctctgacagcctcactccttcc 139
Score = 67.9 bits (34), Expect = 2e-11
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 1 agggaaaaagtgaagctgccagcatgatctatctttggttag 42
|||||||| |||||||||||||||||||||| ||||||||||
Sbjct: 4 agggaaaaggtgaagctgccagcatgatctagctttggttag 45
>RF00640;MIR167_1;EU548982.1/151-266 3702:Arabidopsis thaliana
(thale cress)
Length = 116
Score = 73.8 bits (37), Expect = 4e-13
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 1 agggaaaaagtgaagctgccagcatgatctatctttggtta 41
|||||| ||||||||||||||||||||||||||||||||||
Sbjct: 4 agggaacaagtgaagctgccagcatgatctatctttggtta 44
Score = 63.9 bits (32), Expect = 3e-10
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 57 aaccctagctaggtcatgctgtgacagcctcactccttcc 96
||||| |||||||||||||| |||||||||||||||||||
Sbjct: 73 aacccaagctaggtcatgctctgacagcctcactccttcc 112
>RF00640;MIR167_1;ABIM01012099.1/4885-4992 3649:Carica papaya
(papaya)
Length = 108
Score = 69.9 bits (35), Expect = 6e-12
Identities = 86/101 (85%), Gaps = 9/101 (8%)
Strand = Plus / Plus
Query: 3 ggaaaaagtgaagctgccagcatgatctatctt-------tggttagagaaagaaaggac 55
||||||||||||||||||||||||||||| || |||||| |||| |||| ||
Sbjct: 6 ggaaaaagtgaagctgccagcatgatctagctagctttaatggttatagaa-gaaatga- 63
Query: 56 taaccctagctaggtcatgctgtgacagcctcactccttcc 96
||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 64 taaccctagttaggtcatgctctgacagcctcactccttcc 104
>RF00640;MIR167_1;CAAP02000379.1/19428-19545 29760:Vitis vinifera
Length = 118
Score = 67.9 bits (34), Expect = 2e-11
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 55 ctaaccctagctaggtcatgctgtgacagcctcactccttcc 96
||||||||||||||||||||| |||||||||||||||||||
Sbjct: 73 ctaaccctagctaggtcatgccctgacagcctcactccttcc 114
Score = 60.0 bits (30), Expect = 5e-09
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 1 agggaaaaagtgaagctgccagcatgatctatctttgg 38
|||||| |||||||||||||||||||||||| ||||||
Sbjct: 4 agggaataagtgaagctgccagcatgatctagctttgg 41
>RF00640;MIR167_1;EU084500.1/298-436 260130:Acca sellowiana
Length = 139
Score = 65.9 bits (33), Expect = 9e-11
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 56 taaccctagctaggtcatgctgtgacagcctcactccttcc 96
|||||||||||||||||||||| |||||||||||| |||||
Sbjct: 95 taaccctagctaggtcatgctgcgacagcctcacttcttcc 135
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 agtgaagctgccagcatgatcta 31
|||||||||||||||||||||||
Sbjct: 12 agtgaagctgccagcatgatcta 34
>RF00640;MIR167_1;AC174291.12/5719-6052 3880:Medicago truncatula
(barrel medic)
Length = 334
Score = 61.9 bits (31), Expect = 1e-09
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 3 ggaaaaagtgaagctgccagcatgatctatctttggtta 41
||||||||||||||||||||||||||||| ||||||||
Sbjct: 6 ggaaaaagtgaagctgccagcatgatctaggtttggtta 44
Score = 50.1 bits (25), Expect = 5e-06
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 56 taaccctagctaggtcatgctgtgacagcctcactccttcc 96
||||||| ||||||||||||||| |||||||||||||||
Sbjct: 290 taaccctgactaggtcatgctgtgctagcctcactccttcc 330
>RF00640;MIR167_1;ABXC01005647.1/66563-66713 4558:Sorghum bicolor
(sorghum)
Length = 151
Score = 56.0 bits (28), Expect = 8e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 9 agtgaagctgccagcatgatctatctttggtt 40
||||||||||||||||||||||| ||||||||
Sbjct: 12 agtgaagctgccagcatgatctagctttggtt 43
>RF00640;MIR167_1;AC225328.1/5014-5119 4081:Solanum lycopersicum
Length = 106
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 3 ggaaaaagtgaagctgccagcatgatcta 31
|||| ||||||||||||||||||||||||
Sbjct: 6 ggaacaagtgaagctgccagcatgatcta 34
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 66 taggtcatgctgtgacagcctcactccttcc 96
||||||||||| ||||||||||||||||||
Sbjct: 72 taggtcatgctcggacagcctcactccttcc 102
>RF00640;MIR167_1;ABXC01000087.1/205849-206071 4558:Sorghum
bicolor (sorghum)
Length = 223
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 4 gaaaaagtgaagctgccagcatgatcta 31
|||| |||||||||||||||||||||||
Sbjct: 7 gaaagagtgaagctgccagcatgatcta 34
>RF00640;MIR167_1;EU947925.1/384-504 4577:Zea mays
Length = 121
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 agtgaagctgccagcatgatcta 31
|||||||||||||||||||||||
Sbjct: 12 agtgaagctgccagcatgatcta 34
>RF00640;MIR167_1;ABXC01000050.1/9782-9902 4558:Sorghum bicolor
(sorghum)
Length = 121
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 agtgaagctgccagcatgatcta 31
|||||||||||||||||||||||
Sbjct: 12 agtgaagctgccagcatgatcta 34
>RF00640;MIR167_1;AL928781.4/79791-79930 4530:Oryza sativa (rice)
Length = 140
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 agtgaagctgccagcatgatcta 31
|||||||||||||||||||||||
Sbjct: 12 agtgaagctgccagcatgatcta 34
>RF00640;MIR167_1;AC092076.7/52843-52692 39947:Oryza sativa
Japonica Group
Length = 152
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 agtgaagctgccagcatgatcta 31
|||||||||||||||||||||||
Sbjct: 12 agtgaagctgccagcatgatcta 34
>RF00640;MIR167_1;AAAA02011018.1/78132-77981 39946:Oryza sativa
Indica Group
Length = 152
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 gtgaagctgccagcatgatcta 31
||||||||||||||||||||||
Sbjct: 13 gtgaagctgccagcatgatcta 34
