miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00645;MIR169_2;AARH01005671.1/55685-55803 3694:Populus
           trichocarpa
          Length = 119

 Score =  224 bits (113), Expect = 2e-58
 Identities = 113/113 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagattgatgcagccaaggatgacttgccgacgactcgtttttgctttcatcaatatacg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2   aagattgatgcagccaaggatgacttgccgacgactcgtttttgctttcatcaatatacg 61

                                                                
Query: 61  cataattaagaagagatgaatccgttggcaggttgttcttggctacatttttc 113
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62  cataattaagaagagatgaatccgttggcaggttgttcttggctacatttttc 114




>RF00645;MIR169_2;AARH01007968.1/101578-101471 3694:Populus
          trichocarpa
          Length = 108

 Score = 65.9 bits (33), Expect = 1e-10
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                           
Query: 5  ttgatgcagccaaggatgacttgccgacgactc 37
          |||||||||||||||||||||||||||||||||
Sbjct: 6  ttgatgcagccaaggatgacttgccgacgactc 38



 Score = 54.0 bits (27), Expect = 4e-07
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                      
Query: 69  agaagagatgaatccgttggcaggttgttcttggctacatttt 111
           |||||||||||||  ||||||||||| | ||||||||||||||
Sbjct: 59  agaagagatgaataggttggcaggttttccttggctacatttt 101




>RF00645;MIR169_2;AASG02009044.1/9839-9706 3988:Ricinus communis
          (castor bean)
          Length = 134

 Score = 56.0 bits (28), Expect = 1e-07
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 5  ttgatgcagccaaggatgacttgccgac 32
          ||||||||||||||||||||||||||||
Sbjct: 6  ttgatgcagccaaggatgacttgccgac 33



 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 84  gttggcaggttgttcttggctacatttttc 113
           ||||||||||||| ||||||||||| ||||
Sbjct: 100 gttggcaggttgtccttggctacatgtttc 129




>RF00645;MIR169_2;AARH01000003.1/78094-77924 3694:Populus
          trichocarpa
          Length = 171

 Score = 50.1 bits (25), Expect = 6e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 8  atgcagccaaggatgacttgccgac 32
          |||||||||||||||||||||||||
Sbjct: 9  atgcagccaaggatgacttgccgac 33




>RF00645;MIR169_2;AASG02001387.1/35857-35778 3988:Ricinus communis
          (castor bean)
          Length = 80

 Score = 50.1 bits (25), Expect = 6e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 8  atgcagccaaggatgacttgccgac 32
          |||||||||||||||||||||||||
Sbjct: 9  atgcagccaaggatgacttgccgac 33




>RF00645;MIR169_2;ABIM01016748.1/13946-13822 3649:Carica papaya
          (papaya)
          Length = 125

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 7  gatgcagccaaggatgacttgccg 30
          ||||||||||||||||||||||||
Sbjct: 11 gatgcagccaaggatgacttgccg 34




>RF00645;MIR169_2;CAAP02000269.1/151468-151586 29760:Vitis
          vinifera
          Length = 119

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 9  tgcagccaaggatgacttgccgac 32
          ||||||||||||||||||||||||
Sbjct: 10 tgcagccaaggatgacttgccgac 33




>RF00645;MIR169_2;BT060668.1/99-217 4577:Zea mays
          Length = 119

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 7  gatgcagccaaggatgacttgccg 30
          ||||||||||||||||||||||||
Sbjct: 8  gatgcagccaaggatgacttgccg 31




>RF00645;MIR169_2;ABXC01004427.1/51987-51869 4558:Sorghum bicolor
          (sorghum)
          Length = 119

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 7  gatgcagccaaggatgacttgccg 30
          ||||||||||||||||||||||||
Sbjct: 8  gatgcagccaaggatgacttgccg 31




>RF00645;MIR169_2;AP008214.1/7634984-7635113 39947:Oryza sativa
          Japonica Group
          Length = 130

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 7  gatgcagccaaggatgacttgccg 30
          ||||||||||||||||||||||||
Sbjct: 8  gatgcagccaaggatgacttgccg 31




>RF00645;MIR169_2;AL662968.3/150189-150074 39947:Oryza sativa
          Japonica Group
          Length = 116

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 7  gatgcagccaaggatgacttgccg 30
          ||||||||||||||||||||||||
Sbjct: 8  gatgcagccaaggatgacttgccg 31




>RF00645;MIR169_2;ABIM01024501.1/586-465 3649:Carica papaya
          (papaya)
          Length = 122

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 8  atgcagccaaggatgacttgccg 30
          |||||||||||||||||||||||
Sbjct: 9  atgcagccaaggatgacttgccg 31




>RF00645;MIR169_2;AC189369.2/97764-97940 51351:Brassica rapa
          subsp. pekinensis
          Length = 177

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 9  tgcagccaaggatgacttgccga 31
          |||||||||||||||||||||||
Sbjct: 10 tgcagccaaggatgacttgccga 32




>RF00645;MIR169_2;AP000603.1/13143-12929 3702:Arabidopsis thaliana
          (thale cress)
          Length = 215

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 9  tgcagccaaggatgacttgccga 31
          |||||||||||||||||||||||
Sbjct: 10 tgcagccaaggatgacttgccga 32




>RF00645;MIR169_2;AL392145.1/61605-61729 3702:Arabidopsis thaliana
          (thale cress)
          Length = 125

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 8  atgcagccaaggatgacttgccg 30
          |||||||||||||||||||||||
Sbjct: 9  atgcagccaaggatgacttgccg 31




>RF00645;MIR169_2;AARH01007603.1/209255-209144 3694:Populus
          trichocarpa
          Length = 112

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 8  atgcagccaaggatgacttgccg 30
          |||||||||||||||||||||||
Sbjct: 9  atgcagccaaggatgacttgccg 31




>RF00645;MIR169_2;AARH01002993.1/21348-21232 3694:Populus
          trichocarpa
          Length = 117

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 8  atgcagccaaggatgacttgccg 30
          |||||||||||||||||||||||
Sbjct: 9  atgcagccaaggatgacttgccg 31




>RF00645;MIR169_2;AASG02006838.1/6632-6742 3988:Ricinus communis
          (castor bean)
          Length = 111

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 9  tgcagccaaggatgacttgccga 31
          |||||||||||||||||||||||
Sbjct: 10 tgcagccaaggatgacttgccga 32




>RF00645;MIR169_2;AC148485.10/86560-86786 3880:Medicago truncatula
          (barrel medic)
          Length = 227

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 8  atgcagccaaggatgacttgccg 30
          |||||||||||||||||||||||
Sbjct: 10 atgcagccaaggatgacttgccg 32




>RF00645;MIR169_2;AM489765.1/426-571 4102:Petunia x hybrida
          Length = 146

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 8  atgcagccaaggatgacttgccg 30
          |||||||||||||||||||||||
Sbjct: 12 atgcagccaaggatgacttgccg 34




>RF00645;MIR169_2;AM422776.1/2510-2609 4151:Antirrhinum majus
          (snapdragon)
          Length = 100

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 12 agccaaggatgacttgccgacga 34
          |||||||||||||||||||||||
Sbjct: 15 agccaaggatgacttgccgacga 37




>RF00645;MIR169_2;CAAP02000116.1/144670-144487 29760:Vitis
          vinifera
          Length = 184

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 9  tgcagccaaggatgacttgccga 31
          |||||||||||||||||||||||
Sbjct: 12 tgcagccaaggatgacttgccga 34




>RF00645;MIR169_2;AM434841.1/8747-8930 29760:Vitis vinifera
          Length = 184

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 9  tgcagccaaggatgacttgccga 31
          |||||||||||||||||||||||
Sbjct: 12 tgcagccaaggatgacttgccga 34




>RF00645;MIR169_2;CAAP02000151.1/80017-79930 29760:Vitis vinifera
          Length = 88

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 8  atgcagccaaggatgacttgccg 30
          |||||||||||||||||||||||
Sbjct: 9  atgcagccaaggatgacttgccg 31




>RF00645;MIR169_2;ABXC01006862.1/83418-83293 4558:Sorghum bicolor
          (sorghum)
          Length = 126

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 8  atgcagccaaggatgacttgccg 30
          |||||||||||||||||||||||
Sbjct: 9  atgcagccaaggatgacttgccg 31




>RF00645;MIR169_2;ABXC01001826.1/87733-87847 4558:Sorghum bicolor
          (sorghum)
          Length = 115

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 9  tgcagccaaggatgacttgccga 31
          |||||||||||||||||||||||
Sbjct: 10 tgcagccaaggatgacttgccga 32




>RF00645;MIR169_2;AP005769.3/167010-166879 39947:Oryza sativa
          Japonica Group
          Length = 132

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 8  atgcagccaaggatgacttgccg 30
          |||||||||||||||||||||||
Sbjct: 9  atgcagccaaggatgacttgccg 31




>RF00645;MIR169_2;AP008207.1/8728130-8728248 39947:Oryza sativa
          Japonica Group
          Length = 119

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 9  tgcagccaaggatgacttgccga 31
          |||||||||||||||||||||||
Sbjct: 10 tgcagccaaggatgacttgccga 32




>RF00645;MIR169_2;ABIM01024501.1/10420-10301 3649:Carica papaya
          (papaya)
          Length = 120

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 9  tgcagccaaggatgacttgccg 30
          ||||||||||||||||||||||
Sbjct: 10 tgcagccaaggatgacttgccg 31




>RF00645;MIR169_2;ABIM01004543.1/8825-9065 3649:Carica papaya
          (papaya)
          Length = 241

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 9  tgcagccaaggatgacttgccg 30
          ||||||||||||||||||||||
Sbjct: 12 tgcagccaaggatgacttgccg 33




>RF00645;MIR169_2;AARH01007178.1/187626-187874 3694:Populus
          trichocarpa
          Length = 249

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 9  tgcagccaaggatgacttgccg 30
          ||||||||||||||||||||||
Sbjct: 14 tgcagccaaggatgacttgccg 35




>RF00645;MIR169_2;AASG02007020.1/8399-8148 3988:Ricinus communis
          (castor bean)
          Length = 252

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 9  tgcagccaaggatgacttgccg 30
          ||||||||||||||||||||||
Sbjct: 12 tgcagccaaggatgacttgccg 33




>RF00645;MIR169_2;AC135313.13/45543-45452 3880:Medicago truncatula
          (barrel medic)
          Length = 92

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 9  tgcagccaaggatgacttgccg 30
          ||||||||||||||||||||||
Sbjct: 10 tgcagccaaggatgacttgccg 31




>RF00645;MIR169_2;BABK01024578.1/123-239 34305:Lotus japonicus
          Length = 117

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 9  tgcagccaaggatgacttgccg 30
          ||||||||||||||||||||||
Sbjct: 10 tgcagccaaggatgacttgccg 31




>RF00645;MIR169_2;BABK01005902.1/1720-1822 34305:Lotus japonicus
          Length = 103

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 9  tgcagccaaggatgacttgccg 30
          ||||||||||||||||||||||
Sbjct: 12 tgcagccaaggatgacttgccg 33




>RF00645;MIR169_2;BABK01004287.1/2937-3041 34305:Lotus japonicus
          Length = 105

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 9  tgcagccaaggatgacttgccg 30
          ||||||||||||||||||||||
Sbjct: 10 tgcagccaaggatgacttgccg 31




>RF00645;MIR169_2;AC232769.1/98561-98655 4081:Solanum lycopersicum
          Length = 95

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 9  tgcagccaaggatgacttgccg 30
          ||||||||||||||||||||||
Sbjct: 13 tgcagccaaggatgacttgccg 34




>RF00645;MIR169_2;CAAP02002239.1/50886-50767 29760:Vitis vinifera
          Length = 120

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 9  tgcagccaaggatgacttgccg 30
          ||||||||||||||||||||||
Sbjct: 10 tgcagccaaggatgacttgccg 31




>RF00645;MIR169_2;CAAP02002239.1/44264-44145 29760:Vitis vinifera
          Length = 120

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 9  tgcagccaaggatgacttgccg 30
          ||||||||||||||||||||||
Sbjct: 10 tgcagccaaggatgacttgccg 31




>RF00645;MIR169_2;AM488283.1/32022-31880 29760:Vitis vinifera
          Length = 143

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 9  tgcagccaaggatgacttgccg 30
          ||||||||||||||||||||||
Sbjct: 12 tgcagccaaggatgacttgccg 33




>RF00645;MIR169_2;AM444055.2/7771-7675 29760:Vitis vinifera
          Length = 97

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 9  tgcagccaaggatgacttgccg 30
          ||||||||||||||||||||||
Sbjct: 10 tgcagccaaggatgacttgccg 31