miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00645;MIR169_2;AARH01002993.1/21348-21232 3694:Populus
trichocarpa
Length = 117
Score = 220 bits (111), Expect = 3e-57
Identities = 111/111 (100%)
Strand = Plus / Plus
Query: 1 gagtcgaatgcagccaaggatgacttgccggcatttcctcctaagtagcgagcccggcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 gagtcgaatgcagccaaggatgacttgccggcatttcctcctaagtagcgagcccggcaa 61
Query: 61 ggcttctatttggcacgcccggccggcgggttgtccttggctatatttggt 111
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 ggcttctatttggcacgcccggccggcgggttgtccttggctatatttggt 112
>RF00645;MIR169_2;AARH01007603.1/209255-209144 3694:Populus
trichocarpa
Length = 112
Score = 103 bits (52), Expect = 5e-22
Identities = 94/108 (87%), Gaps = 5/108 (4%)
Strand = Plus / Plus
Query: 1 gagtcgaatgcagccaaggatgacttgccggcatttcctcctaagtagcgagcccggcaa 60
|||| |||||||||||||||||||||||||||||||||||||| ||||| | ||||
Sbjct: 2 gagtagaatgcagccaaggatgacttgccggcatttcctcctaggtagcta-----gcaa 56
Query: 61 ggcttctatttggcacgcccggccggcgggttgtccttggctatattt 108
| ||||||||||||| ||| | ||||| ||||||||||||||| ||||
Sbjct: 57 gccttctatttggcatgcctgtccggcaggttgtccttggctaaattt 104
>RF00645;MIR169_2;BABK01005902.1/1720-1822 34305:Lotus japonicus
Length = 103
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 9 tgcagccaaggatgacttgccggcatt 35
|||||||||||||||||||||||||||
Sbjct: 12 tgcagccaaggatgacttgccggcatt 38
>RF00645;MIR169_2;BABK01004287.1/2937-3041 34305:Lotus japonicus
Length = 105
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 9 tgcagccaaggatgacttgccggcatt 35
|||||||||||||||||||||||||||
Sbjct: 10 tgcagccaaggatgacttgccggcatt 36
>RF00645;MIR169_2;AM489765.1/426-571 4102:Petunia x hybrida
Length = 146
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 7 aatgcagccaaggatgacttgccggca 33
|||||||||||||||||||||||||||
Sbjct: 11 aatgcagccaaggatgacttgccggca 37
>RF00645;MIR169_2;CAAP02000151.1/80017-79930 29760:Vitis vinifera
Length = 88
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 1 gagtcgaatgcagccaaggatgacttgccgg 31
|||| ||||||||||||||||||||||||||
Sbjct: 2 gagtagaatgcagccaaggatgacttgccgg 32
>RF00865;MIR169_5;ABXC01001391.1/122449-122522 4558:Sorghum
bicolor (sorghum)
Length = 74
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 12 agccaaggatgacttgccggcatttc 37
||||||||||||||||||||||||||
Sbjct: 53 agccaaggatgacttgccggcatttc 28
>RF00645;MIR169_2;ABIM01024501.1/586-465 3649:Carica papaya
(papaya)
Length = 122
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 7 aatgcagccaaggatgacttgccggc 32
||||||||||||||||||||||||||
Sbjct: 8 aatgcagccaaggatgacttgccggc 33
>RF00645;MIR169_2;ABXC01001391.1/122512-122383 4558:Sorghum
bicolor (sorghum)
Length = 130
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 12 agccaaggatgacttgccggcatttc 37
||||||||||||||||||||||||||
Sbjct: 12 agccaaggatgacttgccggcatttc 37
>RF00645;MIR169_2;ABXC01006862.1/83418-83293 4558:Sorghum bicolor
(sorghum)
Length = 126
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 6 gaatgcagccaaggatgacttgccgg 31
||||||||||||||||||||||||||
Sbjct: 7 gaatgcagccaaggatgacttgccgg 32
>RF00645;MIR169_2;AP005769.3/167010-166879 39947:Oryza sativa
Japonica Group
Length = 132
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 6 gaatgcagccaaggatgacttgccgg 31
||||||||||||||||||||||||||
Sbjct: 7 gaatgcagccaaggatgacttgccgg 32
>RF00645;MIR169_2;ABIM01016748.1/13946-13822 3649:Carica papaya
(papaya)
Length = 125
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 8 atgcagccaaggatgacttgccggc 32
|||||||||||||||||||||||||
Sbjct: 12 atgcagccaaggatgacttgccggc 36
>RF00645;MIR169_2;ABIM01004543.1/8825-9065 3649:Carica papaya
(papaya)
Length = 241
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 tgcagccaaggatgacttgccggca 33
|||||||||||||||||||||||||
Sbjct: 12 tgcagccaaggatgacttgccggca 36
>RF00645;MIR169_2;AL392145.1/61605-61729 3702:Arabidopsis thaliana
(thale cress)
Length = 125
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 7 aatgcagccaaggatgacttgccgg 31
|||||||||||||||||||||||||
Sbjct: 8 aatgcagccaaggatgacttgccgg 32
>RF00645;MIR169_2;AASG02000349.1/3893-3789 3988:Ricinus communis
(castor bean)
Length = 105
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 6 gaatgcagccaaggatgacttgccggcat 34
|||| ||||||||||||||||||||||||
Sbjct: 8 gaatacagccaaggatgacttgccggcat 36
>RF00645;MIR169_2;AC148485.10/86560-86786 3880:Medicago truncatula
(barrel medic)
Length = 227
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 8 atgcagccaaggatgacttgccggc 32
|||||||||||||||||||||||||
Sbjct: 10 atgcagccaaggatgacttgccggc 34
>RF00645;MIR169_2;BABK01035994.1/667-569 34305:Lotus japonicus
Length = 99
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 7 aatgcagccaaggatgacttgccggcatt 35
|||| ||||||||||||||||||||||||
Sbjct: 8 aatgaagccaaggatgacttgccggcatt 36
>RF00645;MIR169_2;AC232769.1/98561-98655 4081:Solanum lycopersicum
Length = 95
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 tgcagccaaggatgacttgccggca 33
|||||||||||||||||||||||||
Sbjct: 13 tgcagccaaggatgacttgccggca 37
>RF00645;MIR169_2;AM488283.1/32022-31880 29760:Vitis vinifera
Length = 143
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 tgcagccaaggatgacttgccggca 33
|||||||||||||||||||||||||
Sbjct: 12 tgcagccaaggatgacttgccggca 36
>RF00645;MIR169_2;AM458937.2/4897-4993 29760:Vitis vinifera
Length = 97
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 12 agccaaggatgacttgccggcattt 36
|||||||||||||||||||||||||
Sbjct: 13 agccaaggatgacttgccggcattt 37
>RF00645;MIR169_2;AM444055.2/7771-7675 29760:Vitis vinifera
Length = 97
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 tgcagccaaggatgacttgccggca 33
|||||||||||||||||||||||||
Sbjct: 10 tgcagccaaggatgacttgccggca 34
>RF00645;MIR169_2;BT060668.1/99-217 4577:Zea mays
Length = 119
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 8 atgcagccaaggatgacttgccggc 32
|||||||||||||||||||||||||
Sbjct: 9 atgcagccaaggatgacttgccggc 33
>RF00645;MIR169_2;ABXC01004427.1/51987-51869 4558:Sorghum bicolor
(sorghum)
Length = 119
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 8 atgcagccaaggatgacttgccggc 32
|||||||||||||||||||||||||
Sbjct: 9 atgcagccaaggatgacttgccggc 33
>RF00645;MIR169_2;AP008214.1/7634984-7635113 39947:Oryza sativa
Japonica Group
Length = 130
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 8 atgcagccaaggatgacttgccggc 32
|||||||||||||||||||||||||
Sbjct: 9 atgcagccaaggatgacttgccggc 33
>RF00645;MIR169_2;AL662968.3/150189-150074 39947:Oryza sativa
Japonica Group
Length = 116
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 8 atgcagccaaggatgacttgccggc 32
|||||||||||||||||||||||||
Sbjct: 9 atgcagccaaggatgacttgccggc 33
>RF00645;MIR169_2;AARH01003557.1/353551-353722 3694:Populus
trichocarpa
Length = 172
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 gcagccaaggatgacttgccggca 33
||||||||||||||||||||||||
Sbjct: 11 gcagccaaggatgacttgccggca 34
>RF00645;MIR169_2;AASG02007020.1/8399-8148 3988:Ricinus communis
(castor bean)
Length = 252
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 9 tgcagccaaggatgacttgccggc 32
||||||||||||||||||||||||
Sbjct: 12 tgcagccaaggatgacttgccggc 35
>RF00645;MIR169_2;AM476671.2/16778-16661 29760:Vitis vinifera
Length = 118
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 1 gagtcgaatgcagccaaggatgacttgccggcattt 36
|||| ||||| ||||||||||||||||| |||||||
Sbjct: 2 gagtggaatgtagccaaggatgacttgctggcattt 37
>RF00645;MIR169_2;ABIM01024501.1/10420-10301 3649:Carica papaya
(papaya)
Length = 120
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tgcagccaaggatgacttgccgg 31
|||||||||||||||||||||||
Sbjct: 10 tgcagccaaggatgacttgccgg 32
>RF00645;MIR169_2;AARH01007178.1/187626-187874 3694:Populus
trichocarpa
Length = 249
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tgcagccaaggatgacttgccgg 31
|||||||||||||||||||||||
Sbjct: 14 tgcagccaaggatgacttgccgg 36
>RF00645;MIR169_2;AARH01007968.1/101578-101471 3694:Populus
trichocarpa
Length = 108
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 8 atgcagccaaggatgacttgccg 30
|||||||||||||||||||||||
Sbjct: 9 atgcagccaaggatgacttgccg 31
>RF00645;MIR169_2;AARH01011492.1/38551-38428 3694:Populus
trichocarpa
Length = 124
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 cagccaaggatgacttgccggca 33
|||||||||||||||||||||||
Sbjct: 12 cagccaaggatgacttgccggca 34
>RF00645;MIR169_2;AARH01010231.1/110431-110554 3694:Populus
trichocarpa
Length = 124
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 cagccaaggatgacttgccggca 33
|||||||||||||||||||||||
Sbjct: 12 cagccaaggatgacttgccggca 34
>RF00645;MIR169_2;AARH01000003.1/78094-77924 3694:Populus
trichocarpa
Length = 171
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 8 atgcagccaaggatgacttgccg 30
|||||||||||||||||||||||
Sbjct: 9 atgcagccaaggatgacttgccg 31
>RF00645;MIR169_2;AARH01005671.1/55685-55803 3694:Populus
trichocarpa
Length = 119
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 8 atgcagccaaggatgacttgccg 30
|||||||||||||||||||||||
Sbjct: 9 atgcagccaaggatgacttgccg 31
>RF00645;MIR169_2;AASG02001387.1/35857-35778 3988:Ricinus communis
(castor bean)
Length = 80
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 8 atgcagccaaggatgacttgccg 30
|||||||||||||||||||||||
Sbjct: 9 atgcagccaaggatgacttgccg 31
>RF00645;MIR169_2;AASG02000866.1/18426-18322 3988:Ricinus communis
(castor bean)
Length = 105
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 cagccaaggatgacttgccggca 33
|||||||||||||||||||||||
Sbjct: 12 cagccaaggatgacttgccggca 34
>RF00645;MIR169_2;AASG02009044.1/9839-9706 3988:Ricinus communis
(castor bean)
Length = 134
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 8 atgcagccaaggatgacttgccg 30
|||||||||||||||||||||||
Sbjct: 9 atgcagccaaggatgacttgccg 31
>RF00645;MIR169_2;AC135313.13/45543-45452 3880:Medicago truncatula
(barrel medic)
Length = 92
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tgcagccaaggatgacttgccgg 31
|||||||||||||||||||||||
Sbjct: 10 tgcagccaaggatgacttgccgg 32
>RF00645;MIR169_2;BABK01024578.1/123-239 34305:Lotus japonicus
Length = 117
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tgcagccaaggatgacttgccgg 31
|||||||||||||||||||||||
Sbjct: 10 tgcagccaaggatgacttgccgg 32
>RF00645;MIR169_2;BABK01002592.1/3832-3946 34305:Lotus japonicus
Length = 115
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 agccaaggatgacttgccggcat 34
|||||||||||||||||||||||
Sbjct: 13 agccaaggatgacttgccggcat 35
>RF00645;MIR169_2;BABK01041096.1/153-266 34305:Lotus japonicus
Length = 114
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 agccaaggatgacttgccggcat 34
|||||||||||||||||||||||
Sbjct: 13 agccaaggatgacttgccggcat 35
>RF00645;MIR169_2;CAAP02002239.1/50886-50767 29760:Vitis vinifera
Length = 120
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tgcagccaaggatgacttgccgg 31
|||||||||||||||||||||||
Sbjct: 10 tgcagccaaggatgacttgccgg 32
>RF00645;MIR169_2;CAAP02002239.1/44264-44145 29760:Vitis vinifera
Length = 120
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tgcagccaaggatgacttgccgg 31
|||||||||||||||||||||||
Sbjct: 10 tgcagccaaggatgacttgccgg 32
>RF00645;MIR169_2;AC189369.2/97764-97940 51351:Brassica rapa
subsp. pekinensis
Length = 177
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 tgcagccaaggatgacttgccg 30
||||||||||||||||||||||
Sbjct: 10 tgcagccaaggatgacttgccg 31
>RF00645;MIR169_2;AP000603.1/13143-12929 3702:Arabidopsis thaliana
(thale cress)
Length = 215
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 tgcagccaaggatgacttgccg 30
||||||||||||||||||||||
Sbjct: 10 tgcagccaaggatgacttgccg 31
>RF00645;MIR169_2;AASG02006838.1/6632-6742 3988:Ricinus communis
(castor bean)
Length = 111
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 tgcagccaaggatgacttgccg 30
||||||||||||||||||||||
Sbjct: 10 tgcagccaaggatgacttgccg 31
>RF00645;MIR169_2;FM956490.1/302-402 4151:Antirrhinum majus
(snapdragon)
Length = 101
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 cagccaaggatgacttgccggc 32
||||||||||||||||||||||
Sbjct: 12 cagccaaggatgacttgccggc 33
>RF00645;MIR169_2;CAAP02000146.1/86923-86822 29760:Vitis vinifera
Length = 102
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 agccaaggatgacttgccggca 33
||||||||||||||||||||||
Sbjct: 13 agccaaggatgacttgccggca 34
>RF00645;MIR169_2;CAAP02000116.1/144670-144487 29760:Vitis
vinifera
Length = 184
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 tgcagccaaggatgacttgccg 30
||||||||||||||||||||||
Sbjct: 12 tgcagccaaggatgacttgccg 33
>RF00645;MIR169_2;CAAP02000269.1/151468-151586 29760:Vitis
vinifera
Length = 119
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 tgcagccaaggatgacttgccg 30
||||||||||||||||||||||
Sbjct: 10 tgcagccaaggatgacttgccg 31
>RF00645;MIR169_2;AM434841.1/8747-8930 29760:Vitis vinifera
Length = 184
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 tgcagccaaggatgacttgccg 30
||||||||||||||||||||||
Sbjct: 12 tgcagccaaggatgacttgccg 33
>RF00645;MIR169_2;CAAP02000146.1/54492-54392 29760:Vitis vinifera
Length = 101
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 agccaaggatgacttgccggca 33
||||||||||||||||||||||
Sbjct: 13 agccaaggatgacttgccggca 34
>RF00645;MIR169_2;ABXC01001826.1/87733-87847 4558:Sorghum bicolor
(sorghum)
Length = 115
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 tgcagccaaggatgacttgccg 30
||||||||||||||||||||||
Sbjct: 10 tgcagccaaggatgacttgccg 31
>RF00645;MIR169_2;AP008207.1/8728130-8728248 39947:Oryza sativa
Japonica Group
Length = 119
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 tgcagccaaggatgacttgccg 30
||||||||||||||||||||||
Sbjct: 10 tgcagccaaggatgacttgccg 31
