miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00645;MIR169_2;AARH01007603.1/200394-200284 3694:Populus
trichocarpa
Length = 111
Score = 212 bits (107), Expect = 7e-55
Identities = 107/107 (100%)
Strand = Plus / Plus
Query: 1 agagtggatttgagccaaggatgacttgccgcagatgcatggtccttgctgctgatcaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agagtggatttgagccaaggatgacttgccgcagatgcatggtccttgctgctgatcaca 60
Query: 61 taccaaggggggttttgggtggcaagcatccttggttctccttcgct 107
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 taccaaggggggttttgggtggcaagcatccttggttctccttcgct 107
>RF00645;MIR169_2;AM466421.1/3134-3032 29760:Vitis vinifera
Length = 103
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 4 gtggatttgagccaaggatgacttgccgc 32
|||||||||||||||||||||||||||||
Sbjct: 4 gtggatttgagccaaggatgacttgccgc 32
>RF00645;MIR169_2;BABK01002592.1/3832-3946 34305:Lotus japonicus
Length = 115
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 1 agagtggatttgagccaaggatgacttgccg 31
|||||| ||||||||||||||||||||||||
Sbjct: 1 agagtgcatttgagccaaggatgacttgccg 31
>RF00645;MIR169_2;AC157504.2/27710-27818 3880:Medicago truncatula
(barrel medic)
Length = 109
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 8 atttgagccaaggatgacttgccg 31
||||||||||||||||||||||||
Sbjct: 8 atttgagccaaggatgacttgccg 31
>RF00645;MIR169_2;CAAP02000146.1/86923-86822 29760:Vitis vinifera
Length = 102
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 4 gtggatttgagccaaggatgacttgccg 31
||||| ||||||||||||||||||||||
Sbjct: 4 gtggaattgagccaaggatgacttgccg 31
>RF00645;MIR169_2;AB022220.1/69927-69801 3702:Arabidopsis thaliana
(thale cress)
Length = 127
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 5 tggatttgagccaaggatgacttgccg 31
|||| ||||||||||||||||||||||
Sbjct: 5 tggaattgagccaaggatgacttgccg 31
>RF00645;MIR169_2;AC135313.13/36796-36697 3880:Medicago truncatula
(barrel medic)
Length = 100
Score = 46.1 bits (23), Expect = 9e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 agagtggatttgagccaaggatgacttgccg 31
||||| |||||||||||| ||||||||||||
Sbjct: 1 agagtagatttgagccaaagatgacttgccg 31
>RF00645;MIR169_2;ABIM01007332.1/10175-10066 3649:Carica papaya
(papaya)
Length = 110
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 1 agagtggatttgagccaaggatgacttgcc 30
||||||| |||||||||||||||||||||
Sbjct: 1 agagtgggcttgagccaaggatgacttgcc 30
>RF00645;MIR169_2;AY551196.1/39-136 3702:Arabidopsis thaliana
(thale cress)
Length = 98
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 ttgagccaaggatgacttgccg 31
||||||||||||||||||||||
Sbjct: 10 ttgagccaaggatgacttgccg 31
>RF00645;MIR169_2;AL161555.2/100990-100886 3702:Arabidopsis
thaliana (thale cress)
Length = 105
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 ttgagccaaggatgacttgccg 31
||||||||||||||||||||||
Sbjct: 10 ttgagccaaggatgacttgccg 31
>RF00645;MIR169_2;AC024260.4/30609-30513 3702:Arabidopsis thaliana
(thale cress)
Length = 97
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 ttgagccaaggatgacttgccg 31
||||||||||||||||||||||
Sbjct: 10 ttgagccaaggatgacttgccg 31
>RF00645;MIR169_2;AARH01002993.1/13933-13827 3694:Populus
trichocarpa
Length = 107
Score = 44.1 bits (22), Expect = 4e-04
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 5 tggatttgagccaaggatgacttgccgcagatgcatgg 42
|||| ||| ||| ||||||||||||||||||| |||||
Sbjct: 5 tggacttgcgcctaggatgacttgccgcagatacatgg 42
>RF00645;MIR169_2;AASG02000270.1/34976-34853 3988:Ricinus communis
(castor bean)
Length = 124
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgagccaaggatgacttgccgc 32
||||||||||||||||||||||
Sbjct: 11 tgagccaaggatgacttgccgc 32
>RF00645;MIR169_2;CAAP02000146.1/54492-54392 29760:Vitis vinifera
Length = 101
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 2 gagtggatttgagccaaggatgacttgccg 31
||||||| | ||||||||||||||||||||
Sbjct: 2 gagtggaatagagccaaggatgacttgccg 31
