miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00865;MIR169_5;AARH01000344.1/552-673 3694:Populus trichocarpa
Length = 122
Score = 206 bits (104), Expect = 4e-53
Identities = 104/104 (100%)
Strand = Plus / Minus
Query: 1 ccttgcgtggaagccaaggatgacttgcctgagaattttaggaaggtttctatatgaaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113 ccttgcgtggaagccaaggatgacttgcctgagaattttaggaaggtttctatatgaaag 54
Query: 61 ctttttattagttttgcaggaagtcaaccttggctttcctatag 104
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53 ctttttattagttttgcaggaagtcaaccttggctttcctatag 10
>RF00645;MIR169_2;AARH01000344.1/666-556 3694:Populus trichocarpa
Length = 111
Score = 206 bits (104), Expect = 4e-53
Identities = 104/104 (100%)
Strand = Plus / Plus
Query: 1 ccttgcgtggaagccaaggatgacttgcctgagaattttaggaaggtttctatatgaaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 ccttgcgtggaagccaaggatgacttgcctgagaattttaggaaggtttctatatgaaag 62
Query: 61 ctttttattagttttgcaggaagtcaaccttggctttcctatag 104
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63 ctttttattagttttgcaggaagtcaaccttggctttcctatag 106
>RF00865;MIR169_5;CAAP02000001.1/222970-222840 29760:Vitis vinifera
Length = 131
Score = 46.1 bits (23), Expect = 9e-05
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 1 ccttgcgtggaagccaaggatgacttgcctg 31
||||| |||| ||||||||||||||||||||
Sbjct: 122 ccttgtgtggtagccaaggatgacttgcctg 92
>RF00645;MIR169_2;CAAP02000001.1/222847-222964 29760:Vitis
vinifera
Length = 118
Score = 46.1 bits (23), Expect = 9e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 ccttgcgtggaagccaaggatgacttgcctg 31
||||| |||| ||||||||||||||||||||
Sbjct: 3 ccttgtgtggtagccaaggatgacttgcctg 33
>RF00865;MIR169_5;ABIM01022203.1/1489-1639 3649:Carica papaya
(papaya)
Length = 151
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 12 agccaaggatgacttgcctgag 33
||||||||||||||||||||||
Sbjct: 131 agccaaggatgacttgcctgag 110
>RF00865;MIR169_5;AY551206.1/170-33 3702:Arabidopsis thaliana (thale
cress)
Length = 138
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 2 cttgcgtggaagccaaggatgacttgcctg 31
|||| |||| ||||||||||||||||||||
Sbjct: 129 cttgtgtggtagccaaggatgacttgcctg 100
>RF00645;MIR169_2;ABIM01022203.1/1632-1495 3649:Carica papaya
(papaya)
Length = 138
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 agccaaggatgacttgcctgag 33
||||||||||||||||||||||
Sbjct: 14 agccaaggatgacttgcctgag 35
>RF00645;MIR169_2;AC025808.8/28771-28647 3702:Arabidopsis thaliana
(thale cress)
Length = 125
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 2 cttgcgtggaagccaaggatgacttgcctg 31
|||| |||| ||||||||||||||||||||
Sbjct: 3 cttgtgtggtagccaaggatgacttgcctg 32
