miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00643;MIR171_1;AY728470.1/5-86 3694:Populus trichocarpa
Length = 82
Score = 97.6 bits (49), Expect = 3e-20
Identities = 74/81 (91%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 14 gatattggtacggttcaatcagaaagtaatgctcccaaaagtatagagtactattgtttg 73
||||||||| ||||||||||||| ||||||||||| | ||| |||||| ||||||||||
Sbjct: 3 gatattggtgcggttcaatcagatagtaatgctcc-ataagcatagagctctattgtttg 61
Query: 74 attgagccgtgccaatatcac 94
|||||||||||||||||||||
Sbjct: 62 attgagccgtgccaatatcac 82
>RF00643;MIR171_1;AM449096.1/12478-12578 29760:Vitis vinifera
Length = 101
Score = 61.9 bits (31), Expect = 1e-09
Identities = 73/87 (83%)
Strand = Plus / Plus
Query: 10 acgggatattggtacggttcaatcagaaagtaatgctcccaaaagtatagagtactattg 69
||||||||||||| ||||||||| |||||| | ||||| ||| | | |||| || |
Sbjct: 7 acgggatattggtgcggttcaataagaaagcagtgctcgcaatctttttgagttctggtt 66
Query: 70 tttgattgagccgtgccaatatcacgt 96
|||||||||||||||||||||||||||
Sbjct: 67 tttgattgagccgtgccaatatcacgt 93
>RF00643;MIR171_1;ABIM01020876.1/9287-9189 3649:Carica papaya
(papaya)
Length = 99
Score = 60.0 bits (30), Expect = 6e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 67 ttgtttgattgagccgtgccaatatcacgt 96
||||||||||||||||||||||||||||||
Sbjct: 62 ttgtttgattgagccgtgccaatatcacgt 91
>RF00643;MIR171_1;AASG02000735.1/28318-28416 3988:Ricinus communis
(castor bean)
Length = 99
Score = 60.0 bits (30), Expect = 6e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 67 ttgtttgattgagccgtgccaatatcacgt 96
||||||||||||||||||||||||||||||
Sbjct: 62 ttgtttgattgagccgtgccaatatcacgt 91
>RF00643;MIR171_1;BABK01058807.1/722-623 34305:Lotus japonicus
Length = 100
Score = 60.0 bits (30), Expect = 6e-09
Identities = 76/90 (84%), Gaps = 1/90 (1%)
Strand = Plus / Plus
Query: 7 aaaacgggatattggtacggttcaatcagaaagtaatgctcccaaaagtatagagtacta 66
|||||||||||||||| ||||||||| |||||| || |||| ||| || | ||| |
Sbjct: 4 aaaacgggatattggtccggttcaataagaaagcaaagctcg-aaacgtttggagctttg 62
Query: 67 ttgtttgattgagccgtgccaatatcacgt 96
|| |||||||||||||||||||||||||||
Sbjct: 63 ttttttgattgagccgtgccaatatcacgt 92
>RF00643;MIR171_1;AM446221.1/52246-52149 29760:Vitis vinifera
Length = 98
Score = 60.0 bits (30), Expect = 6e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 67 ttgtttgattgagccgtgccaatatcacgt 96
||||||||||||||||||||||||||||||
Sbjct: 61 ttgtttgattgagccgtgccaatatcacgt 90
>RF00643;MIR171_1;ABIM01004247.1/37375-37272 3649:Carica papaya
(papaya)
Length = 104
Score = 56.0 bits (28), Expect = 9e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 70 tttgattgagccgtgccaatatcacgta 97
||||||||||||||||||||||||||||
Sbjct: 70 tttgattgagccgtgccaatatcacgta 97
>RF00643;MIR171_1;ABIM01016020.1/2222-2123 3649:Carica papaya
(papaya)
Length = 100
Score = 56.0 bits (28), Expect = 9e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 70 tttgattgagccgtgccaatatcacgta 97
||||||||||||||||||||||||||||
Sbjct: 66 tttgattgagccgtgccaatatcacgta 93
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 9 aacgggatattggtacggttcaatcagaaa 38
|||||||||||||| ||||||||| |||||
Sbjct: 6 aacgggatattggtccggttcaataagaaa 35
>RF00643;MIR171_1;AASG02001674.1/19617-19518 3988:Ricinus communis
(castor bean)
Length = 100
Score = 56.0 bits (28), Expect = 9e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 70 tttgattgagccgtgccaatatcacgtacact 101
||||||||||||||||||||||||||| ||||
Sbjct: 66 tttgattgagccgtgccaatatcacgtgcact 97
Score = 46.1 bits (23), Expect = 9e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 8 aaacgggatattggtacggttcaatcagaaa 38
||||||||||||||| ||||||||| |||||
Sbjct: 5 aaacgggatattggtccggttcaataagaaa 35
>RF00643;MIR171_1;AC134967.20/116067-116170 3880:Medicago
truncatula (barrel medic)
Length = 104
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 70 tttgattgagccgtgccaatatcacgt 96
|||||||||||||||||||||||||||
Sbjct: 70 tttgattgagccgtgccaatatcacgt 96
>RF00643;MIR171_1;ABXC01004438.1/173968-173868 4558:Sorghum
bicolor (sorghum)
Length = 101
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 70 tttgattgagccgtgccaatatcacgt 96
|||||||||||||||||||||||||||
Sbjct: 67 tttgattgagccgtgccaatatcacgt 93
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 10 acgggatattggtacggttcaatcagaaag 39
|||||||||||| ||||||||||||||||
Sbjct: 7 acgggatattggcgcggttcaatcagaaag 36
>RF00643;MIR171_1;ABXC01000089.1/209731-209588 4558:Sorghum bicolor
(sorghum)
Length = 144
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 68 tgtttgattgagccgtgccaatatcac 94
|||||||||||||||||||||||||||
Sbjct: 108 tgtttgattgagccgtgccaatatcac 134
>RF00643;MIR171_1;AY551250.1/5-106 4530:Oryza sativa (rice)
Length = 102
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 70 tttgattgagccgtgccaatatcacgt 96
|||||||||||||||||||||||||||
Sbjct: 68 tttgattgagccgtgccaatatcacgt 94
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 10 acgggatattggtacggttcaatcagaaag 39
|||||||||||| ||||||||||||||||
Sbjct: 7 acgggatattggggcggttcaatcagaaag 36
>RF00643;MIR171_1;AL606645.2/80760-80660 39947:Oryza sativa
Japonica Group
Length = 101
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 9 aacgggatattggtacggttcaatcagaaag 39
|||||||||||||| ||||||||||||||||
Sbjct: 6 aacgggatattggtgcggttcaatcagaaag 36
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 70 tttgattgagccgtgccaatatcacgt 96
|||||||||||||||||||||||||||
Sbjct: 67 tttgattgagccgtgccaatatcacgt 93
>RF00643;MIR171_1;EU549150.1/415-315 3702:Arabidopsis thaliana
(thale cress)
Length = 101
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 70 tttgattgagccgtgccaatatcacg 95
||||||||||||||||||||||||||
Sbjct: 67 tttgattgagccgtgccaatatcacg 92
>RF00643;MIR171_1;FM163807.1/196-297 3702:Arabidopsis thaliana
(thale cress)
Length = 102
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 67 ttgtttgattgagccgtgccaatatcacg 95
||||| |||||||||||||||||||||||
Sbjct: 65 ttgttcgattgagccgtgccaatatcacg 93
>RF00643;MIR171_1;BABK01108397.1/266-409 34305:Lotus japonicus
Length = 144
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 68 tgtttgattgagccgtgccaatatc 92
|||||||||||||||||||||||||
Sbjct: 108 tgtttgattgagccgtgccaatatc 132
>RF00643;MIR171_1;AC219214.1/21177-21278 4081:Solanum lycopersicum
Length = 102
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 70 tttgattgagccgtgccaatatcac 94
|||||||||||||||||||||||||
Sbjct: 68 tttgattgagccgtgccaatatcac 92
>RF00643;MIR171_1;BT035609.1/466-577 4577:Zea mays
Length = 112
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 72 tgattgagccgtgccaatatcacgt 96
|||||||||||||||||||||||||
Sbjct: 80 tgattgagccgtgccaatatcacgt 104
>RF00643;MIR171_1;ABXC01004625.1/104342-104456 4558:Sorghum bicolor
(sorghum)
Length = 115
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 72 tgattgagccgtgccaatatcacgt 96
|||||||||||||||||||||||||
Sbjct: 83 tgattgagccgtgccaatatcacgt 107
>RF00643;MIR171_1;AC150705.17/109871-109755 3880:Medicago truncatula
(barrel medic)
Length = 117
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 69 gtttgattgagccgtgccaatatc 92
||||||||||||||||||||||||
Sbjct: 82 gtttgattgagccgtgccaatatc 105
>RF00643;MIR171_1;AC215407.2/42962-42863 4081:Solanum lycopersicum
Length = 100
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 74 attgagccgtgccaatatcacgta 97
||||||||||||||||||||||||
Sbjct: 70 attgagccgtgccaatatcacgta 93
>RF00643;MIR171_1;AC215372.2/27425-27538 4081:Solanum lycopersicum
Length = 114
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 69 gtttgattgagccgtgccaatatc 92
||||||||||||||||||||||||
Sbjct: 79 gtttgattgagccgtgccaatatc 102
>RF00643;MIR171_1;BT069726.1/119-252 4577:Zea mays
Length = 134
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 71 ttgattgagccgtgccaatatcac 94
||||||||||||||||||||||||
Sbjct: 101 ttgattgagccgtgccaatatcac 124
>RF00643;MIR171_1;BT018211.1/119-253 4577:Zea mays
Length = 135
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 71 ttgattgagccgtgccaatatcac 94
||||||||||||||||||||||||
Sbjct: 102 ttgattgagccgtgccaatatcac 125
>RF00643;MIR171_1;ABIM01002570.1/7961-8103 3649:Carica papaya
(papaya)
Length = 143
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 70 tttgattgagccgtgccaatatc 92
|||||||||||||||||||||||
Sbjct: 109 tttgattgagccgtgccaatatc 131
>RF00643;MIR171_1;AY728471.1/4-115 3694:Populus trichocarpa
Length = 112
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 70 tttgattgagccgtgccaatatc 92
|||||||||||||||||||||||
Sbjct: 88 tttgattgagccgtgccaatatc 110
>RF00643;MIR171_1;AY871043.1/2-86 3694:Populus trichocarpa
Length = 85
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 72 tgattgagccgtgccaatatcac 94
|||||||||||||||||||||||
Sbjct: 63 tgattgagccgtgccaatatcac 85
>RF00643;MIR171_1;AASG02000279.1/67999-67862 3988:Ricinus communis
(castor bean)
Length = 138
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 70 tttgattgagccgtgccaatatc 92
|||||||||||||||||||||||
Sbjct: 104 tttgattgagccgtgccaatatc 126
>RF00643;MIR171_1;AASG02019837.1/638-762 3988:Ricinus communis
(castor bean)
Length = 125
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 70 tttgattgagccgtgccaatatc 92
|||||||||||||||||||||||
Sbjct: 91 tttgattgagccgtgccaatatc 113
>RF00643;MIR171_1;BABK01022931.1/1462-1563 34305:Lotus japonicus
Length = 102
Score = 46.1 bits (23), Expect = 9e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 59 gagtactattgtttgattgagccgtgccaatatca 93
||||||| | || ||||||||||||||||||||||
Sbjct: 57 gagtactttagtctgattgagccgtgccaatatca 91
>RF00643;MIR171_1;BABK01005968.1/2486-2599 34305:Lotus japonicus
Length = 114
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 70 tttgattgagccgtgccaatatc 92
|||||||||||||||||||||||
Sbjct: 80 tttgattgagccgtgccaatatc 102
>RF00643;MIR171_1;AC212766.1/32177-32277 4081:Solanum lycopersicum
Length = 101
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 70 tttgattgagccgtgccaatatcacgt 96
||||||||||||| |||||||||||||
Sbjct: 67 tttgattgagccgcgccaatatcacgt 93
>RF00643;MIR171_1;AM486682.2/2891-2758 29760:Vitis vinifera
Length = 134
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 70 tttgattgagccgtgccaatatc 92
|||||||||||||||||||||||
Sbjct: 100 tttgattgagccgtgccaatatc 122
>RF00643;MIR171_1;CAAP02019255.1/437-320 29760:Vitis vinifera
Length = 118
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 70 tttgattgagccgtgccaatatc 92
|||||||||||||||||||||||
Sbjct: 84 tttgattgagccgtgccaatatc 106
>RF00643;MIR171_1;AACV01007865.1/2509-2381 39947:Oryza sativa
Japonica Group
Length = 129
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 72 tgattgagccgtgccaatatcac 94
|||||||||||||||||||||||
Sbjct: 97 tgattgagccgtgccaatatcac 119
>RF00643;MIR171_1;ABIM01014311.1/7039-6927 3649:Carica papaya
(papaya)
Length = 113
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 72 tgattgagccgtgccaatatca 93
||||||||||||||||||||||
Sbjct: 83 tgattgagccgtgccaatatca 104
>RF00643;MIR171_1;CR962130.3/48254-48370 3880:Medicago truncatula
(barrel medic)
Length = 117
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 70 tttgattgagccgtgccaatat 91
||||||||||||||||||||||
Sbjct: 83 tttgattgagccgtgccaatat 104
>RF00643;MIR171_1;CAAP02001068.1/13036-12938 29760:Vitis vinifera
Length = 99
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 72 tgattgagccgtgccaatatca 93
||||||||||||||||||||||
Sbjct: 67 tgattgagccgtgccaatatca 88
>RF00643;MIR171_1;CAAP02002421.1/13383-13479 29760:Vitis vinifera
Length = 97
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 72 tgattgagccgtgccaatatca 93
||||||||||||||||||||||
Sbjct: 65 tgattgagccgtgccaatatca 86
