miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00643;MIR171_1;AY728470.1/5-86 3694:Populus trichocarpa
Length = 82
Score = 163 bits (82), Expect = 5e-40
Identities = 82/82 (100%)
Strand = Plus / Plus
Query: 12 gagatattggtgcggttcaatcagatagtaatgctccataagcatagagctctattgttt 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gagatattggtgcggttcaatcagatagtaatgctccataagcatagagctctattgttt 60
Query: 72 gattgagccgtgccaatatcac 93
||||||||||||||||||||||
Sbjct: 61 gattgagccgtgccaatatcac 82
>RF00643;MIR171_1;AASG02000735.1/28318-28416 3988:Ricinus communis
(castor bean)
Length = 99
Score = 71.9 bits (36), Expect = 2e-12
Identities = 76/87 (87%), Gaps = 3/87 (3%)
Strand = Plus / Plus
Query: 10 acgagatattggtgcggttcaatcagatagtaatgctccataagcatagagctcta-ttg 68
||||||||||||||||||||||||||| | | ||||| ||| |||||||| | |||
Sbjct: 7 acgagatattggtgcggttcaatcagagatcattgctctatat--atagagcttttgttg 64
Query: 69 tttgattgagccgtgccaatatcacgt 95
|||||||||||||||||||||||||||
Sbjct: 65 tttgattgagccgtgccaatatcacgt 91
>RF00643;MIR171_1;ABIM01004247.1/37375-37272 3649:Carica papaya
(papaya)
Length = 104
Score = 65.9 bits (33), Expect = 9e-11
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 69 tttgattgagccgtgccaatatcacgtatatgt 101
|||||||||||||||||||||||||||||||||
Sbjct: 70 tttgattgagccgtgccaatatcacgtatatgt 102
>RF00643;MIR171_1;ABIM01020876.1/9287-9189 3649:Carica papaya
(papaya)
Length = 99
Score = 61.9 bits (31), Expect = 1e-09
Identities = 74/87 (85%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 9 aacgagatattggtgcggttcaatcagatagtaatgctccataagcatagagctctattg 68
||||||||||||||||||||||||| || || | | ||| | ||| ||||| | |||
Sbjct: 6 aacgagatattggtgcggttcaatcggagagcattactcta-aagtgtagagacgtgttg 64
Query: 69 tttgattgagccgtgccaatatcacgt 95
|||||||||||||||||||||||||||
Sbjct: 65 tttgattgagccgtgccaatatcacgt 91
>RF00643;MIR171_1;AM446221.1/52246-52149 29760:Vitis vinifera
Length = 98
Score = 61.9 bits (31), Expect = 1e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 61 ctctattgtttgattgagccgtgccaatatcacgt 95
|||| ||||||||||||||||||||||||||||||
Sbjct: 56 ctctgttgtttgattgagccgtgccaatatcacgt 90
>RF00643;MIR171_1;ABIM01016020.1/2222-2123 3649:Carica papaya
(papaya)
Length = 100
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 69 tttgattgagccgtgccaatatcacgtat 97
|||||||||||||||||||||||||||||
Sbjct: 66 tttgattgagccgtgccaatatcacgtat 94
>RF00643;MIR171_1;EU549150.1/415-315 3702:Arabidopsis thaliana
(thale cress)
Length = 101
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 10 acgagatattggtgcggttcaatcaga 36
|||||||||||||||||||||||||||
Sbjct: 7 acgagatattggtgcggttcaatcaga 33
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 69 tttgattgagccgtgccaatatcacg 94
||||||||||||||||||||||||||
Sbjct: 67 tttgattgagccgtgccaatatcacg 92
>RF00643;MIR171_1;AASG02001674.1/19617-19518 3988:Ricinus communis
(castor bean)
Length = 100
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 69 tttgattgagccgtgccaatatcacgt 95
|||||||||||||||||||||||||||
Sbjct: 66 tttgattgagccgtgccaatatcacgt 92
>RF00643;MIR171_1;AC134967.20/116067-116170 3880:Medicago
truncatula (barrel medic)
Length = 104
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 69 tttgattgagccgtgccaatatcacgt 95
|||||||||||||||||||||||||||
Sbjct: 70 tttgattgagccgtgccaatatcacgt 96
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 12 gagatattggtgcggttcaatcaga 36
|||||||||||||||||||||||||
Sbjct: 9 gagatattggtgcggttcaatcaga 33
>RF00643;MIR171_1;BABK01058807.1/722-623 34305:Lotus japonicus
Length = 100
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 69 tttgattgagccgtgccaatatcacgt 95
|||||||||||||||||||||||||||
Sbjct: 66 tttgattgagccgtgccaatatcacgt 92
>RF00643;MIR171_1;AM449096.1/12478-12578 29760:Vitis vinifera
Length = 101
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 69 tttgattgagccgtgccaatatcacgt 95
|||||||||||||||||||||||||||
Sbjct: 67 tttgattgagccgtgccaatatcacgt 93
>RF00643;MIR171_1;ABXC01004438.1/173968-173868 4558:Sorghum
bicolor (sorghum)
Length = 101
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 69 tttgattgagccgtgccaatatcacgt 95
|||||||||||||||||||||||||||
Sbjct: 67 tttgattgagccgtgccaatatcacgt 93
>RF00643;MIR171_1;ABXC01000089.1/209731-209588 4558:Sorghum bicolor
(sorghum)
Length = 144
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 67 tgtttgattgagccgtgccaatatcac 93
|||||||||||||||||||||||||||
Sbjct: 108 tgtttgattgagccgtgccaatatcac 134
>RF00643;MIR171_1;AY551250.1/5-106 4530:Oryza sativa (rice)
Length = 102
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 69 tttgattgagccgtgccaatatcacgt 95
|||||||||||||||||||||||||||
Sbjct: 68 tttgattgagccgtgccaatatcacgt 94
>RF00643;MIR171_1;AL606645.2/80760-80660 39947:Oryza sativa
Japonica Group
Length = 101
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 69 tttgattgagccgtgccaatatcacgt 95
|||||||||||||||||||||||||||
Sbjct: 67 tttgattgagccgtgccaatatcacgt 93
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 9 aacgagatattggtgcggttcaatcaga 36
|||| |||||||||||||||||||||||
Sbjct: 6 aacgggatattggtgcggttcaatcaga 33
>RF00643;MIR171_1;FM163807.1/196-297 3702:Arabidopsis thaliana
(thale cress)
Length = 102
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 66 ttgtttgattgagccgtgccaatatcacg 94
||||| |||||||||||||||||||||||
Sbjct: 65 ttgttcgattgagccgtgccaatatcacg 93
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 11 cgagatattggtgcggttcaatcagatagt 40
||||||||| |||||||||||||| |||||
Sbjct: 8 cgagatattagtgcggttcaatcaaatagt 37
>RF00643;MIR171_1;BABK01108397.1/266-409 34305:Lotus japonicus
Length = 144
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 67 tgtttgattgagccgtgccaatatc 91
|||||||||||||||||||||||||
Sbjct: 108 tgtttgattgagccgtgccaatatc 132
>RF00643;MIR171_1;AC215407.2/42962-42863 4081:Solanum lycopersicum
Length = 100
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 8 taacgagatattggtgcggttcaat 32
|||||||||||||||||||||||||
Sbjct: 5 taacgagatattggtgcggttcaat 29
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 73 attgagccgtgccaatatcacgtat 97
|||||||||||||||||||||||||
Sbjct: 70 attgagccgtgccaatatcacgtat 94
>RF00643;MIR171_1;AC219214.1/21177-21278 4081:Solanum lycopersicum
Length = 102
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 69 tttgattgagccgtgccaatatcac 93
|||||||||||||||||||||||||
Sbjct: 68 tttgattgagccgtgccaatatcac 92
>RF00643;MIR171_1;BT035609.1/466-577 4577:Zea mays
Length = 112
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 71 tgattgagccgtgccaatatcacgt 95
|||||||||||||||||||||||||
Sbjct: 80 tgattgagccgtgccaatatcacgt 104
>RF00643;MIR171_1;ABXC01004625.1/104342-104456 4558:Sorghum bicolor
(sorghum)
Length = 115
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 71 tgattgagccgtgccaatatcacgt 95
|||||||||||||||||||||||||
Sbjct: 83 tgattgagccgtgccaatatcacgt 107
>RF00643;MIR171_1;AC150705.17/109871-109755 3880:Medicago truncatula
(barrel medic)
Length = 117
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 68 gtttgattgagccgtgccaatatc 91
||||||||||||||||||||||||
Sbjct: 82 gtttgattgagccgtgccaatatc 105
>RF00643;MIR171_1;AC215372.2/27425-27538 4081:Solanum lycopersicum
Length = 114
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 68 gtttgattgagccgtgccaatatc 91
||||||||||||||||||||||||
Sbjct: 79 gtttgattgagccgtgccaatatc 102
>RF00643;MIR171_1;BT069726.1/119-252 4577:Zea mays
Length = 134
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 70 ttgattgagccgtgccaatatcac 93
||||||||||||||||||||||||
Sbjct: 101 ttgattgagccgtgccaatatcac 124
>RF00643;MIR171_1;BT018211.1/119-253 4577:Zea mays
Length = 135
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 70 ttgattgagccgtgccaatatcac 93
||||||||||||||||||||||||
Sbjct: 102 ttgattgagccgtgccaatatcac 125
>RF00643;MIR171_1;ABIM01002570.1/7961-8103 3649:Carica papaya
(papaya)
Length = 143
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 69 tttgattgagccgtgccaatatc 91
|||||||||||||||||||||||
Sbjct: 109 tttgattgagccgtgccaatatc 131
>RF00643;MIR171_1;AY728471.1/4-115 3694:Populus trichocarpa
Length = 112
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 69 tttgattgagccgtgccaatatc 91
|||||||||||||||||||||||
Sbjct: 88 tttgattgagccgtgccaatatc 110
>RF00643;MIR171_1;AY871043.1/2-86 3694:Populus trichocarpa
Length = 85
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 71 tgattgagccgtgccaatatcac 93
|||||||||||||||||||||||
Sbjct: 63 tgattgagccgtgccaatatcac 85
>RF00643;MIR171_1;AASG02000279.1/67999-67862 3988:Ricinus communis
(castor bean)
Length = 138
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 69 tttgattgagccgtgccaatatc 91
|||||||||||||||||||||||
Sbjct: 104 tttgattgagccgtgccaatatc 126
>RF00643;MIR171_1;AASG02019837.1/638-762 3988:Ricinus communis
(castor bean)
Length = 125
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 69 tttgattgagccgtgccaatatc 91
|||||||||||||||||||||||
Sbjct: 91 tttgattgagccgtgccaatatc 113
>RF00643;MIR171_1;BABK01005968.1/2486-2599 34305:Lotus japonicus
Length = 114
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 69 tttgattgagccgtgccaatatc 91
|||||||||||||||||||||||
Sbjct: 80 tttgattgagccgtgccaatatc 102
>RF00643;MIR171_1;AC212766.1/32177-32277 4081:Solanum lycopersicum
Length = 101
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 acgagatattggtgcggttcaat 32
|||||||||||||||||||||||
Sbjct: 7 acgagatattggtgcggttcaat 29
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 69 tttgattgagccgtgccaatatcacgt 95
||||||||||||| |||||||||||||
Sbjct: 67 tttgattgagccgcgccaatatcacgt 93
>RF00643;MIR171_1;AM486682.2/2891-2758 29760:Vitis vinifera
Length = 134
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 69 tttgattgagccgtgccaatatc 91
|||||||||||||||||||||||
Sbjct: 100 tttgattgagccgtgccaatatc 122
>RF00643;MIR171_1;CAAP02019255.1/437-320 29760:Vitis vinifera
Length = 118
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 69 tttgattgagccgtgccaatatc 91
|||||||||||||||||||||||
Sbjct: 84 tttgattgagccgtgccaatatc 106
>RF00643;MIR171_1;AACV01007865.1/2509-2381 39947:Oryza sativa
Japonica Group
Length = 129
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 71 tgattgagccgtgccaatatcac 93
|||||||||||||||||||||||
Sbjct: 97 tgattgagccgtgccaatatcac 119
>RF00643;MIR171_1;ABIM01014311.1/7039-6927 3649:Carica papaya
(papaya)
Length = 113
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 71 tgattgagccgtgccaatatca 92
||||||||||||||||||||||
Sbjct: 83 tgattgagccgtgccaatatca 104
>RF00643;MIR171_1;CR962130.3/48254-48370 3880:Medicago truncatula
(barrel medic)
Length = 117
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 69 tttgattgagccgtgccaatat 90
||||||||||||||||||||||
Sbjct: 83 tttgattgagccgtgccaatat 104
>RF00643;MIR171_1;BABK01022931.1/1462-1563 34305:Lotus japonicus
Length = 102
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 71 tgattgagccgtgccaatatca 92
||||||||||||||||||||||
Sbjct: 70 tgattgagccgtgccaatatca 91
>RF00643;MIR171_1;CAAP02001068.1/13036-12938 29760:Vitis vinifera
Length = 99
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 71 tgattgagccgtgccaatatca 92
||||||||||||||||||||||
Sbjct: 67 tgattgagccgtgccaatatca 88
>RF00643;MIR171_1;CAAP02002421.1/13383-13479 29760:Vitis vinifera
Length = 97
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 71 tgattgagccgtgccaatatca 92
||||||||||||||||||||||
Sbjct: 65 tgattgagccgtgccaatatca 86
