miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00643;MIR171_1;AC152351.7/84740-84636 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 133 bits (67), Expect = 5e-31
Identities = 90/95 (94%), Gaps = 2/95 (2%)
Strand = Plus / Plus
Query: 6 aaagcgatgttggtgaggttcaatccgaagacggatttacacgtgaaagtaattgtaaaa 65
||||||||||||||||||||||||||||||||||||||||| || | || | ||||||||
Sbjct: 6 aaagcgatgttggtgaggttcaatccgaagacggatttacatgt-atag-agttgtaaaa 63
Query: 66 tacgatctcagattgagccgcgccaatatcacttt 100
|||||||||||||||||||||||||||||||||||
Sbjct: 64 tacgatctcagattgagccgcgccaatatcacttt 98
>RF00643;MIR171_1;AY728474.1/2-89 3694:Populus trichocarpa
Length = 88
Score = 109 bits (55), Expect = 7e-24
Identities = 83/92 (90%), Gaps = 4/92 (4%)
Strand = Plus / Plus
Query: 8 agcgatgttggtgaggttcaatccgaagacggatttacacgtgaaagtaattgtaaaata 67
|||||||||||||||||||||||||||||| |||||||||| ||| | |||||||
Sbjct: 1 agcgatgttggtgaggttcaatccgaagacagatttacacg----agtgaaagtaaaatc 56
Query: 68 cgatctcagattgagccgcgccaatatcactt 99
||||||||||||||||||||||||||||||||
Sbjct: 57 cgatctcagattgagccgcgccaatatcactt 88
>RF00643;MIR171_1;AASG02008156.1/3849-3747 3988:Ricinus communis
(castor bean)
Length = 103
Score = 101 bits (51), Expect = 2e-21
Identities = 85/96 (88%), Gaps = 4/96 (4%)
Strand = Plus / Plus
Query: 5 gaaagcgatgttggtgaggttcaatccgaagacggatttacacgtgaaagtaattgtaaa 64
||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 5 gaaagcgatgttggtgaggttcaatccgaagacggatttacac----attctgttgtaaa 60
Query: 65 atacgatctcagattgagccgcgccaatatcacttt 100
||||||||||||||||||||||||||||||||||
Sbjct: 61 ggacgatctcagattgagccgcgccaatatcacttt 96
>RF00643;MIR171_1;ABIM01011221.1/13564-13667 3649:Carica papaya
(papaya)
Length = 104
Score = 89.7 bits (45), Expect = 7e-18
Identities = 88/100 (88%), Gaps = 3/100 (3%)
Strand = Plus / Plus
Query: 2 aaagaaagcgatgttggtgaggttcaatccgaagacggatttacacgtgaaagtaattgt 61
||||||||||||||||||||||||||||| |||||| |||||||| | | | | |||||
Sbjct: 2 aaagaaagcgatgttggtgaggttcaatctgaagacagatttacatgag-atgcgattgt 60
Query: 62 aaaatacgatctcagattgagccgcgccaatatcactttc 101
||| |||||||||| |||||||||||||||||||||||
Sbjct: 61 --aattcgatctcagaatgagccgcgccaatatcactttc 98
>RF00643;MIR171_1;CAAP02000222.1/31256-31356 29760:Vitis vinifera
Length = 101
Score = 81.8 bits (41), Expect = 2e-15
Identities = 87/101 (86%), Gaps = 6/101 (5%)
Strand = Plus / Plus
Query: 2 aaagaaagcgatgttggtgaggttcaatccgaagacggatttacacgtgaaagtaattgt 61
|||| ||||||||||||||||||||||||||||||||||||||| ||| | ||
Sbjct: 2 aaagtaagcgatgttggtgaggttcaatccgaagacggatttac----gaa--gagccgt 55
Query: 62 aaaatacgatctcagattgagccgcgccaatatcactttct 102
||| |||||||| |||||||||||||||||||||||||||
Sbjct: 56 aaagaacgatctctgattgagccgcgccaatatcactttct 96
>RF00643;MIR171_1;AM437215.2/7577-7677 29760:Vitis vinifera
Length = 101
Score = 77.8 bits (39), Expect = 3e-14
Identities = 83/98 (84%), Gaps = 6/98 (6%)
Strand = Plus / Plus
Query: 3 aagaaagcgatgttggtgaggttcaatccgaagacggatttacacgtgaaagtaattgta 62
|||||||||||||||||||||||||||| ||||| |||||| | |||| ||||
Sbjct: 3 aagaaagcgatgttggtgaggttcaatctgaagattgatttatgcttgaa------tgta 56
Query: 63 aaatacgatctcagattgagccgcgccaatatcacttt 100
||| ||||||||||||||||||||||||||||||||
Sbjct: 57 aaaactgatctcagattgagccgcgccaatatcacttt 94
>RF00643;MIR171_1;AC209588.1/19088-18986 4081:Solanum lycopersicum
Length = 103
Score = 71.9 bits (36), Expect = 2e-12
Identities = 79/93 (84%), Gaps = 4/93 (4%)
Strand = Plus / Plus
Query: 7 aagcgatgttggtgaggttcaatccgaagacggatttacacgtgaaagtaattgtaaaat 66
|||||||||||||||||||||||||||||||| ||||| || | | |||||
Sbjct: 7 aagcgatgttggtgaggttcaatccgaagacgaattta----tgcttattttcgtaaaga 62
Query: 67 acgatctcagattgagccgcgccaatatcactt 99
|||||||||||||||||||||||||||||||||
Sbjct: 63 acgatctcagattgagccgcgccaatatcactt 95
>RF00643;MIR171_1;ABEU01001861.1/185639-185542
145481:Physcomitrella patens subsp. patens
Length = 98
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 72 ctcagattgagccgcgccaatatcac 97
||||||||||||||||||||||||||
Sbjct: 63 ctcagattgagccgcgccaatatcac 88
>RF00643;MIR171_1;ABEU01005399.1/9805-9901 145481:Physcomitrella
patens subsp. patens
Length = 97
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 73 tcagattgagccgcgccaatatcac 97
|||||||||||||||||||||||||
Sbjct: 63 tcagattgagccgcgccaatatcac 87
>RF00643;MIR171_1;ABXC01002454.1/83659-83541 4558:Sorghum bicolor
(sorghum)
Length = 119
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 76 gattgagccgcgccaatatcactt 99
||||||||||||||||||||||||
Sbjct: 88 gattgagccgcgccaatatcactt 111
>RF00643;MIR171_1;AP010316.1/5761-5862 34305:Lotus japonicus
Length = 102
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 76 gattgagccgcgccaatatcac 97
||||||||||||||||||||||
Sbjct: 71 gattgagccgcgccaatatcac 92
>RF00643;MIR171_1;AC212766.1/32177-32277 4081:Solanum lycopersicum
Length = 101
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 76 gattgagccgcgccaatatcac 97
||||||||||||||||||||||
Sbjct: 70 gattgagccgcgccaatatcac 91
>RF00643;MIR171_1;AP003573.3/25796-25895 39947:Oryza sativa
Japonica Group
Length = 100
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 8 agcgatgttggtgaggttcaatccga 33
|||||| |||||||||||||||||||
Sbjct: 8 agcgatattggtgaggttcaatccga 33
