miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00643;MIR171_1;AY728474.1/2-89 3694:Populus trichocarpa
Length = 88
Score = 174 bits (88), Expect = 1e-43
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 8 agcgatgttggtgaggttcaatccgaagacagatttacacgagtgaaagtaaaatccgat 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agcgatgttggtgaggttcaatccgaagacagatttacacgagtgaaagtaaaatccgat 60
Query: 68 ctcagattgagccgcgccaatatcactt 95
||||||||||||||||||||||||||||
Sbjct: 61 ctcagattgagccgcgccaatatcactt 88
>RF00643;MIR171_1;ABIM01011221.1/13564-13667 3649:Carica papaya
(papaya)
Length = 104
Score = 103 bits (52), Expect = 4e-22
Identities = 86/96 (89%), Gaps = 1/96 (1%)
Strand = Plus / Plus
Query: 2 aaagaaagcgatgttggtgaggttcaatccgaagacagatttacacgag-tgaaagtaaa 60
||||||||||||||||||||||||||||| ||||||||||||||| ||| || | | |
Sbjct: 2 aaagaaagcgatgttggtgaggttcaatctgaagacagatttacatgagatgcgattgta 61
Query: 61 atccgatctcagattgagccgcgccaatatcacttt 96
|| |||||||||| ||||||||||||||||||||||
Sbjct: 62 attcgatctcagaatgagccgcgccaatatcacttt 97
>RF00643;MIR171_1;AC152351.7/84740-84636 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 101 bits (51), Expect = 2e-21
Identities = 84/94 (89%), Gaps = 2/94 (2%)
Strand = Plus / Plus
Query: 6 aaagcgatgttggtgaggttcaatccgaagacagatttacacgagtgaaa--gtaaaatc 63
|||||||||||||||||||||||||||||||| |||||||| | | | |||||||
Sbjct: 6 aaagcgatgttggtgaggttcaatccgaagacggatttacatgtatagagttgtaaaata 65
Query: 64 cgatctcagattgagccgcgccaatatcactttt 97
||||||||||||||||||||||||||||||||||
Sbjct: 66 cgatctcagattgagccgcgccaatatcactttt 99
>RF00643;MIR171_1;AM437215.2/7577-7677 29760:Vitis vinifera
Length = 101
Score = 97.6 bits (49), Expect = 3e-20
Identities = 85/96 (88%), Gaps = 2/96 (2%)
Strand = Plus / Plus
Query: 3 aagaaagcgatgttggtgaggttcaatccgaagacagatttacacgagtgaaagtaaaat 62
|||||||||||||||||||||||||||| ||||| |||||| | |||| ||||||
Sbjct: 3 aagaaagcgatgttggtgaggttcaatctgaagattgatttatgct--tgaatgtaaaaa 60
Query: 63 ccgatctcagattgagccgcgccaatatcacttttc 98
| ||||||||||||||||||||||||||||||||||
Sbjct: 61 ctgatctcagattgagccgcgccaatatcacttttc 96
>RF00643;MIR171_1;AASG02008156.1/3849-3747 3988:Ricinus communis
(castor bean)
Length = 103
Score = 93.7 bits (47), Expect = 4e-19
Identities = 83/95 (87%)
Strand = Plus / Plus
Query: 5 gaaagcgatgttggtgaggttcaatccgaagacagatttacacgagtgaaagtaaaatcc 64
||||||||||||||||||||||||||||||||| ||||||||| ||||| |
Sbjct: 5 gaaagcgatgttggtgaggttcaatccgaagacggatttacacattctgttgtaaaggac 64
Query: 65 gatctcagattgagccgcgccaatatcacttttca 99
|||||||||||||||||||||||||||||||||||
Sbjct: 65 gatctcagattgagccgcgccaatatcacttttca 99
>RF00643;MIR171_1;CAAP02000222.1/31256-31356 29760:Vitis vinifera
Length = 101
Score = 75.8 bits (38), Expect = 9e-14
Identities = 83/96 (86%), Gaps = 4/96 (4%)
Strand = Plus / Plus
Query: 2 aaagaaagcgatgttggtgaggttcaatccgaagacagatttac-acgagtgaaagtaaa 60
|||| ||||||||||||||||||||||||||||||| ||||||| | ||| |||||
Sbjct: 2 aaagtaagcgatgttggtgaggttcaatccgaagacggatttacgaagag---ccgtaaa 58
Query: 61 atccgatctcagattgagccgcgccaatatcacttt 96
||||||| |||||||||||||||||||||||||
Sbjct: 59 gaacgatctctgattgagccgcgccaatatcacttt 94
>RF00643;MIR171_1;AC209588.1/19088-18986 4081:Solanum lycopersicum
Length = 103
Score = 65.9 bits (33), Expect = 9e-11
Identities = 75/89 (84%)
Strand = Plus / Plus
Query: 7 aagcgatgttggtgaggttcaatccgaagacagatttacacgagtgaaagtaaaatccga 66
||||||||||||||||||||||||||||||| ||||| | | ||||| |||
Sbjct: 7 aagcgatgttggtgaggttcaatccgaagacgaatttatgcttattttcgtaaagaacga 66
Query: 67 tctcagattgagccgcgccaatatcactt 95
|||||||||||||||||||||||||||||
Sbjct: 67 tctcagattgagccgcgccaatatcactt 95
>RF00643;MIR171_1;ABEU01001861.1/185639-185542
145481:Physcomitrella patens subsp. patens
Length = 98
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 68 ctcagattgagccgcgccaatatcac 93
||||||||||||||||||||||||||
Sbjct: 63 ctcagattgagccgcgccaatatcac 88
>RF00643;MIR171_1;ABEU01005399.1/9805-9901 145481:Physcomitrella
patens subsp. patens
Length = 97
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 69 tcagattgagccgcgccaatatcac 93
|||||||||||||||||||||||||
Sbjct: 63 tcagattgagccgcgccaatatcac 87
>RF00643;MIR171_1;ABXC01002454.1/83659-83541 4558:Sorghum bicolor
(sorghum)
Length = 119
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 72 gattgagccgcgccaatatcactt 95
||||||||||||||||||||||||
Sbjct: 88 gattgagccgcgccaatatcactt 111
>RF00643;MIR171_1;AP010316.1/5761-5862 34305:Lotus japonicus
Length = 102
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 72 gattgagccgcgccaatatcac 93
||||||||||||||||||||||
Sbjct: 71 gattgagccgcgccaatatcac 92
>RF00643;MIR171_1;AC212766.1/32177-32277 4081:Solanum lycopersicum
Length = 101
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 72 gattgagccgcgccaatatcac 93
||||||||||||||||||||||
Sbjct: 70 gattgagccgcgccaatatcac 91
>RF00643;MIR171_1;AP003573.3/25796-25895 39947:Oryza sativa
Japonica Group
Length = 100
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 8 agcgatgttggtgaggttcaatccga 33
|||||| |||||||||||||||||||
Sbjct: 8 agcgatattggtgaggttcaatccga 33
