miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00643;MIR171_1;AY871043.1/2-86 3694:Populus trichocarpa
Length = 85
Score = 168 bits (85), Expect = 8e-42
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 9 gggatgttgggatggctcaatcatgtcaaatctcccaaattatgatgttgggtcttttaa 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gggatgttgggatggctcaatcatgtcaaatctcccaaattatgatgttgggtcttttaa 60
Query: 69 tctgattgagccgtgccaatatcac 93
|||||||||||||||||||||||||
Sbjct: 61 tctgattgagccgtgccaatatcac 85
>RF00643;MIR171_1;ABIM01004247.1/37375-37272 3649:Carica papaya
(papaya)
Length = 104
Score = 93.7 bits (47), Expect = 4e-19
Identities = 78/87 (89%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 8 ggggatgttgggatggctcaatcatgtcaaatctcccaaat-tatgatgttgggtctttt 66
||||||||||| |||||||||||| |||||||||| || | | |||| |||||||||||
Sbjct: 8 ggggatgttggaatggctcaatcaaatcaaatctccaaagtctttgattttgggtctttt 67
Query: 67 aatctgattgagccgtgccaatatcac 93
||| |||||||||||||||||||||||
Sbjct: 68 aatttgattgagccgtgccaatatcac 94
>RF00643;MIR171_1;AASG02006362.1/4770-4867 3988:Ricinus communis
(castor bean)
Length = 98
Score = 79.8 bits (40), Expect = 6e-15
Identities = 73/84 (86%), Gaps = 5/84 (5%)
Strand = Plus / Plus
Query: 8 ggggatgttgggatggctcaatcatgtcaaatctcccaaattatgatgttgggtctttta 67
||||||||||| |||||||||||| |||||||||||||| | | |||||| ||||
Sbjct: 8 ggggatgttggaatggctcaatcaaatcaaatctcccaaagttt-----tgggtccttta 62
Query: 68 atctgattgagccgtgccaatatc 91
||||||||||||||||||||||||
Sbjct: 63 atctgattgagccgtgccaatatc 86
>RF00643;MIR171_1;CAAP02001068.1/13036-12938 29760:Vitis vinifera
Length = 99
Score = 79.8 bits (40), Expect = 6e-15
Identities = 74/85 (87%), Gaps = 4/85 (4%)
Strand = Plus / Plus
Query: 8 ggggatgttgggatggctcaatcatgtcaaatctcccaaattatgatgttgggtctttta 67
||||||||||| |||||||||||| ||||||||||||| | | ||||||| ||||
Sbjct: 8 ggggatgttggaatggctcaatcaaatcaaatctcccaag----ggttttgggtccttta 63
Query: 68 atctgattgagccgtgccaatatca 92
|||||||||||||||||||||||||
Sbjct: 64 atctgattgagccgtgccaatatca 88
>RF00643;MIR171_1;CAAP02002421.1/13383-13479 29760:Vitis vinifera
Length = 97
Score = 60.0 bits (30), Expect = 6e-09
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 55 gttgggtcttttaatctgattgagccgtgccaatatca 92
|||| ||| |||||||||||||||||||||||||||||
Sbjct: 49 gttgagtcctttaatctgattgagccgtgccaatatca 86
>RF00643;MIR171_1;ABIM01014311.1/7039-6927 3649:Carica papaya
(papaya)
Length = 113
Score = 56.0 bits (28), Expect = 9e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 61 tcttttaatctgattgagccgtgccaatatca 92
||||||| ||||||||||||||||||||||||
Sbjct: 73 tcttttagtctgattgagccgtgccaatatca 104
>RF00643;MIR171_1;AASG02007113.1/1812-1912 3988:Ricinus communis
(castor bean)
Length = 101
Score = 56.0 bits (28), Expect = 9e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 64 tttaatctgattgagccgtgccaatatc 91
||||||||||||||||||||||||||||
Sbjct: 62 tttaatctgattgagccgtgccaatatc 89
>RF00643;MIR171_1;AACV01007865.1/2509-2381 39947:Oryza sativa
Japonica Group
Length = 129
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 69 tctgattgagccgtgccaatatcaca 94
||||||||||||||||||||||||||
Sbjct: 95 tctgattgagccgtgccaatatcaca 120
>RF00643;MIR171_1;AY728466.1/3-80 3694:Populus trichocarpa
Length = 78
Score = 50.1 bits (25), Expect = 5e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 55 gttgggtcttttaatctgattgagccgtgccaatatc 91
||||||| ||| ||||||||||||||||||||||||
Sbjct: 40 gttgggttctttcatctgattgagccgtgccaatatc 76
>RF00643;MIR171_1;BABK01022931.1/1462-1563 34305:Lotus japonicus
Length = 102
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 64 tttaatctgattgagccgtgccaatatca 92
|||| ||||||||||||||||||||||||
Sbjct: 63 tttagtctgattgagccgtgccaatatca 91
>RF00643;MIR171_1;BT035609.1/466-577 4577:Zea mays
Length = 112
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 69 tctgattgagccgtgccaatatcac 93
|||||||||||||||||||||||||
Sbjct: 78 tctgattgagccgtgccaatatcac 102
>RF00643;MIR171_1;ABXC01004625.1/104342-104456 4558:Sorghum bicolor
(sorghum)
Length = 115
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 69 tctgattgagccgtgccaatatcac 93
|||||||||||||||||||||||||
Sbjct: 81 tctgattgagccgtgccaatatcac 105
>RF00643;MIR171_1;AC219214.1/21177-21278 4081:Solanum lycopersicum
Length = 102
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 71 tgattgagccgtgccaatatcaca 94
||||||||||||||||||||||||
Sbjct: 70 tgattgagccgtgccaatatcaca 93
>RF00643;MIR171_1;BT069726.1/119-252 4577:Zea mays
Length = 134
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 71 tgattgagccgtgccaatatcaca 94
||||||||||||||||||||||||
Sbjct: 102 tgattgagccgtgccaatatcaca 125
>RF00643;MIR171_1;BT018211.1/119-253 4577:Zea mays
Length = 135
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 71 tgattgagccgtgccaatatcaca 94
||||||||||||||||||||||||
Sbjct: 103 tgattgagccgtgccaatatcaca 126
>RF00643;MIR171_1;ABXC01000089.1/209731-209588 4558:Sorghum bicolor
(sorghum)
Length = 144
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 71 tgattgagccgtgccaatatcaca 94
||||||||||||||||||||||||
Sbjct: 112 tgattgagccgtgccaatatcaca 135
>RF00643;MIR171_1;ABIM01016020.1/2222-2123 3649:Carica papaya
(papaya)
Length = 100
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 71 tgattgagccgtgccaatatcac 93
|||||||||||||||||||||||
Sbjct: 68 tgattgagccgtgccaatatcac 90
>RF00643;MIR171_1;ABIM01020876.1/9287-9189 3649:Carica papaya
(papaya)
Length = 99
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 71 tgattgagccgtgccaatatcac 93
|||||||||||||||||||||||
Sbjct: 67 tgattgagccgtgccaatatcac 89
>RF00643;MIR171_1;EU549150.1/415-315 3702:Arabidopsis thaliana
(thale cress)
Length = 101
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 71 tgattgagccgtgccaatatcac 93
|||||||||||||||||||||||
Sbjct: 69 tgattgagccgtgccaatatcac 91
>RF00643;MIR171_1;AY728470.1/5-86 3694:Populus trichocarpa
Length = 82
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 71 tgattgagccgtgccaatatcac 93
|||||||||||||||||||||||
Sbjct: 60 tgattgagccgtgccaatatcac 82
>RF00643;MIR171_1;AARH01001039.1/225464-225596 3694:Populus
trichocarpa
Length = 133
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 69 tctgattgagccgtgccaatatc 91
|||||||||||||||||||||||
Sbjct: 99 tctgattgagccgtgccaatatc 121
>RF00643;MIR171_1;AASG02001674.1/19617-19518 3988:Ricinus communis
(castor bean)
Length = 100
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 71 tgattgagccgtgccaatatcac 93
|||||||||||||||||||||||
Sbjct: 68 tgattgagccgtgccaatatcac 90
>RF00643;MIR171_1;AASG02000735.1/28318-28416 3988:Ricinus communis
(castor bean)
Length = 99
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 71 tgattgagccgtgccaatatcac 93
|||||||||||||||||||||||
Sbjct: 67 tgattgagccgtgccaatatcac 89
>RF00643;MIR171_1;AC134967.20/116067-116170 3880:Medicago
truncatula (barrel medic)
Length = 104
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 71 tgattgagccgtgccaatatcac 93
|||||||||||||||||||||||
Sbjct: 72 tgattgagccgtgccaatatcac 94
>RF00643;MIR171_1;BABK01058807.1/722-623 34305:Lotus japonicus
Length = 100
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 71 tgattgagccgtgccaatatcac 93
|||||||||||||||||||||||
Sbjct: 68 tgattgagccgtgccaatatcac 90
>RF00643;MIR171_1;AM449096.1/12478-12578 29760:Vitis vinifera
Length = 101
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 71 tgattgagccgtgccaatatcac 93
|||||||||||||||||||||||
Sbjct: 69 tgattgagccgtgccaatatcac 91
>RF00643;MIR171_1;AM446221.1/52246-52149 29760:Vitis vinifera
Length = 98
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 71 tgattgagccgtgccaatatcac 93
|||||||||||||||||||||||
Sbjct: 66 tgattgagccgtgccaatatcac 88
>RF00643;MIR171_1;EU940714.1/212-315 4577:Zea mays
Length = 104
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 69 tctgattgagccgtgccaatatc 91
|||||||||||||||||||||||
Sbjct: 70 tctgattgagccgtgccaatatc 92
>RF00643;MIR171_1;EU946837.1/362-465 4577:Zea mays
Length = 104
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 69 tctgattgagccgtgccaatatc 91
|||||||||||||||||||||||
Sbjct: 70 tctgattgagccgtgccaatatc 92
>RF00643;MIR171_1;ABXC01000488.1/1154-1044 4558:Sorghum bicolor
(sorghum)
Length = 111
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 69 tctgattgagccgtgccaatatc 91
|||||||||||||||||||||||
Sbjct: 77 tctgattgagccgtgccaatatc 99
>RF00643;MIR171_1;ABXC01000737.1/81777-81641 4558:Sorghum bicolor
(sorghum)
Length = 137
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 69 tctgattgagccgtgccaatatc 91
|||||||||||||||||||||||
Sbjct: 103 tctgattgagccgtgccaatatc 125
>RF00643;MIR171_1;ABXC01004438.1/173968-173868 4558:Sorghum
bicolor (sorghum)
Length = 101
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 71 tgattgagccgtgccaatatcac 93
|||||||||||||||||||||||
Sbjct: 69 tgattgagccgtgccaatatcac 91
>RF00643;MIR171_1;AY551250.1/5-106 4530:Oryza sativa (rice)
Length = 102
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 71 tgattgagccgtgccaatatcac 93
|||||||||||||||||||||||
Sbjct: 70 tgattgagccgtgccaatatcac 92
>RF00643;MIR171_1;AAAA02030424.1/14947-15083 39946:Oryza sativa
Indica Group
Length = 137
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 69 tctgattgagccgtgccaatatc 91
|||||||||||||||||||||||
Sbjct: 103 tctgattgagccgtgccaatatc 125
>RF00643;MIR171_1;AC215662.2/9608-9473 4537:Oryza punctata
Length = 136
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 69 tctgattgagccgtgccaatatc 91
|||||||||||||||||||||||
Sbjct: 102 tctgattgagccgtgccaatatc 124
>RF00643;MIR171_1;AAAA02007796.1/27966-27846 39946:Oryza sativa
Indica Group
Length = 121
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 69 tctgattgagccgtgccaatatc 91
|||||||||||||||||||||||
Sbjct: 87 tctgattgagccgtgccaatatc 109
>RF00643;MIR171_1;AP008209.1/1950936-1951056 39947:Oryza sativa
Japonica Group
Length = 121
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 69 tctgattgagccgtgccaatatc 91
|||||||||||||||||||||||
Sbjct: 87 tctgattgagccgtgccaatatc 109
>RF00643;MIR171_1;AL606645.2/80760-80660 39947:Oryza sativa
Japonica Group
Length = 101
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 71 tgattgagccgtgccaatatcac 93
|||||||||||||||||||||||
Sbjct: 69 tgattgagccgtgccaatatcac 91
>RF00643;MIR171_1;FM163807.1/196-297 3702:Arabidopsis thaliana
(thale cress)
Length = 102
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 72 gattgagccgtgccaatatcac 93
||||||||||||||||||||||
Sbjct: 71 gattgagccgtgccaatatcac 92
>RF00643;MIR171_1;AC150705.17/109871-109755 3880:Medicago truncatula
(barrel medic)
Length = 117
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 71 tgattgagccgtgccaatatcacact 96
||||||||||||||||||||| ||||
Sbjct: 85 tgattgagccgtgccaatatctcact 110
>RF00643;MIR171_1;BABK01005968.1/2486-2599 34305:Lotus japonicus
Length = 114
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 71 tgattgagccgtgccaatatcacact 96
||||||||||||||||||||| ||||
Sbjct: 82 tgattgagccgtgccaatatctcact 107
>RF00643;MIR171_1;BABK01108397.1/266-409 34305:Lotus japonicus
Length = 144
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 71 tgattgagccgtgccaatatcacact 96
||||||||||||||||||||| ||||
Sbjct: 112 tgattgagccgtgccaatatctcact 137
>RF00643;MIR171_1;AP010316.1/5761-5862 34305:Lotus japonicus
Length = 102
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 68 atctgattgagccgtgccaatatcac 93
|||||||||||||| |||||||||||
Sbjct: 67 atctgattgagccgcgccaatatcac 92
>RF00643;MIR171_1;CAAP02019255.1/437-320 29760:Vitis vinifera
Length = 118
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 62 cttttaatctgattgagccgtgccaatatc 91
||||| || |||||||||||||||||||||
Sbjct: 77 cttttgatttgattgagccgtgccaatatc 106
