miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00643;MIR171_1;AY871043.1/2-86 3694:Populus trichocarpa
          Length = 85

 Score =  145 bits (73), Expect = 1e-34
 Identities = 82/85 (96%)
 Strand = Plus / Plus

                                                                      
Query: 9  gggatgttgggatggctcaatcatatcaaatctcccaaactatgatgttgggtcgtttaa 68
          |||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||
Sbjct: 1  gggatgttgggatggctcaatcatgtcaaatctcccaaattatgatgttgggtcttttaa 60

                                   
Query: 69 tctgattgagccgtgccaatatcac 93
          |||||||||||||||||||||||||
Sbjct: 61 tctgattgagccgtgccaatatcac 85




>RF00643;MIR171_1;ABIM01004247.1/37375-37272 3649:Carica papaya
          (papaya)
          Length = 104

 Score = 93.7 bits (47), Expect = 4e-19
 Identities = 78/87 (89%), Gaps = 1/87 (1%)
 Strand = Plus / Plus

                                                                      
Query: 8  ggggatgttgggatggctcaatcatatcaaatctcccaaa-ctatgatgttgggtcgttt 66
          ||||||||||| |||||||||||| ||||||||||| ||  || |||| ||||||| |||
Sbjct: 8  ggggatgttggaatggctcaatcaaatcaaatctccaaagtctttgattttgggtctttt 67

                                     
Query: 67 aatctgattgagccgtgccaatatcac 93
          ||| |||||||||||||||||||||||
Sbjct: 68 aatttgattgagccgtgccaatatcac 94




>RF00643;MIR171_1;AASG02006362.1/4770-4867 3988:Ricinus communis
          (castor bean)
          Length = 98

 Score = 87.7 bits (44), Expect = 2e-17
 Identities = 74/84 (88%), Gaps = 5/84 (5%)
 Strand = Plus / Plus

                                                                      
Query: 8  ggggatgttgggatggctcaatcatatcaaatctcccaaactatgatgttgggtcgttta 67
          ||||||||||| |||||||||||| |||||||||||||||      | ||||||| ||||
Sbjct: 8  ggggatgttggaatggctcaatcaaatcaaatctcccaaa-----gttttgggtccttta 62

                                  
Query: 68 atctgattgagccgtgccaatatc 91
          ||||||||||||||||||||||||
Sbjct: 63 atctgattgagccgtgccaatatc 86




>RF00643;MIR171_1;CAAP02001068.1/13036-12938 29760:Vitis vinifera
          Length = 99

 Score = 87.7 bits (44), Expect = 2e-17
 Identities = 75/85 (88%), Gaps = 4/85 (4%)
 Strand = Plus / Plus

                                                                      
Query: 8  ggggatgttgggatggctcaatcatatcaaatctcccaaactatgatgttgggtcgttta 67
          ||||||||||| |||||||||||| ||||||||||||||     | | ||||||| ||||
Sbjct: 8  ggggatgttggaatggctcaatcaaatcaaatctcccaag----ggttttgggtccttta 63

                                   
Query: 68 atctgattgagccgtgccaatatca 92
          |||||||||||||||||||||||||
Sbjct: 64 atctgattgagccgtgccaatatca 88




>RF00643;MIR171_1;CAAP02002421.1/13383-13479 29760:Vitis vinifera
          Length = 97

 Score = 60.0 bits (30), Expect = 6e-09
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                
Query: 55 gttgggtcgtttaatctgattgagccgtgccaatatca 92
          |||| ||| |||||||||||||||||||||||||||||
Sbjct: 49 gttgagtcctttaatctgattgagccgtgccaatatca 86




>RF00643;MIR171_1;AASG02007113.1/1812-1912 3988:Ricinus communis
          (castor bean)
          Length = 101

 Score = 56.0 bits (28), Expect = 9e-08
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 64 tttaatctgattgagccgtgccaatatc 91
          ||||||||||||||||||||||||||||
Sbjct: 62 tttaatctgattgagccgtgccaatatc 89




>RF00643;MIR171_1;AACV01007865.1/2509-2381 39947:Oryza sativa
           Japonica Group
          Length = 129

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 69  tctgattgagccgtgccaatatcaca 94
           ||||||||||||||||||||||||||
Sbjct: 95  tctgattgagccgtgccaatatcaca 120




>RF00643;MIR171_1;ABIM01014311.1/7039-6927 3649:Carica papaya
           (papaya)
          Length = 113

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 64  tttaatctgattgagccgtgccaatatca 92
           |||| ||||||||||||||||||||||||
Sbjct: 76  tttagtctgattgagccgtgccaatatca 104




>RF00643;MIR171_1;AY728466.1/3-80 3694:Populus trichocarpa
          Length = 78

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                               
Query: 55 gttgggtcgtttaatctgattgagccgtgccaatatc 91
          |||||||  ||| ||||||||||||||||||||||||
Sbjct: 40 gttgggttctttcatctgattgagccgtgccaatatc 76




>RF00643;MIR171_1;BABK01022931.1/1462-1563 34305:Lotus japonicus
          Length = 102

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 64 tttaatctgattgagccgtgccaatatca 92
          |||| ||||||||||||||||||||||||
Sbjct: 63 tttagtctgattgagccgtgccaatatca 91




>RF00643;MIR171_1;BT035609.1/466-577 4577:Zea mays
          Length = 112

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 69  tctgattgagccgtgccaatatcac 93
           |||||||||||||||||||||||||
Sbjct: 78  tctgattgagccgtgccaatatcac 102




>RF00643;MIR171_1;ABXC01004625.1/104342-104456 4558:Sorghum bicolor
           (sorghum)
          Length = 115

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 69  tctgattgagccgtgccaatatcac 93
           |||||||||||||||||||||||||
Sbjct: 81  tctgattgagccgtgccaatatcac 105




>RF00643;MIR171_1;AC219214.1/21177-21278 4081:Solanum lycopersicum
          Length = 102

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 71 tgattgagccgtgccaatatcaca 94
          ||||||||||||||||||||||||
Sbjct: 70 tgattgagccgtgccaatatcaca 93




>RF00643;MIR171_1;BT069726.1/119-252 4577:Zea mays
          Length = 134

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 71  tgattgagccgtgccaatatcaca 94
           ||||||||||||||||||||||||
Sbjct: 102 tgattgagccgtgccaatatcaca 125




>RF00643;MIR171_1;BT018211.1/119-253 4577:Zea mays
          Length = 135

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 71  tgattgagccgtgccaatatcaca 94
           ||||||||||||||||||||||||
Sbjct: 103 tgattgagccgtgccaatatcaca 126




>RF00643;MIR171_1;ABXC01000089.1/209731-209588 4558:Sorghum bicolor
           (sorghum)
          Length = 144

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 71  tgattgagccgtgccaatatcaca 94
           ||||||||||||||||||||||||
Sbjct: 112 tgattgagccgtgccaatatcaca 135




>RF00643;MIR171_1;ABIM01016020.1/2222-2123 3649:Carica papaya
          (papaya)
          Length = 100

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 71 tgattgagccgtgccaatatcac 93
          |||||||||||||||||||||||
Sbjct: 68 tgattgagccgtgccaatatcac 90




>RF00643;MIR171_1;ABIM01020876.1/9287-9189 3649:Carica papaya
          (papaya)
          Length = 99

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 71 tgattgagccgtgccaatatcac 93
          |||||||||||||||||||||||
Sbjct: 67 tgattgagccgtgccaatatcac 89




>RF00643;MIR171_1;EU549150.1/415-315 3702:Arabidopsis thaliana
          (thale cress)
          Length = 101

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 71 tgattgagccgtgccaatatcac 93
          |||||||||||||||||||||||
Sbjct: 69 tgattgagccgtgccaatatcac 91




>RF00643;MIR171_1;AY728471.1/4-115 3694:Populus trichocarpa
          Length = 112

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 61  tcgtttaatctgattgagccgtgccaatatc 91
           |||||| || |||||||||||||||||||||
Sbjct: 80  tcgtttgatttgattgagccgtgccaatatc 110




>RF00643;MIR171_1;AY728470.1/5-86 3694:Populus trichocarpa
          Length = 82

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 71 tgattgagccgtgccaatatcac 93
          |||||||||||||||||||||||
Sbjct: 60 tgattgagccgtgccaatatcac 82




>RF00643;MIR171_1;AARH01001039.1/225464-225596 3694:Populus
           trichocarpa
          Length = 133

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 69  tctgattgagccgtgccaatatc 91
           |||||||||||||||||||||||
Sbjct: 99  tctgattgagccgtgccaatatc 121




>RF00643;MIR171_1;AASG02001674.1/19617-19518 3988:Ricinus communis
          (castor bean)
          Length = 100

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 71 tgattgagccgtgccaatatcac 93
          |||||||||||||||||||||||
Sbjct: 68 tgattgagccgtgccaatatcac 90




>RF00643;MIR171_1;AASG02000735.1/28318-28416 3988:Ricinus communis
          (castor bean)
          Length = 99

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 71 tgattgagccgtgccaatatcac 93
          |||||||||||||||||||||||
Sbjct: 67 tgattgagccgtgccaatatcac 89




>RF00643;MIR171_1;AC150705.17/109871-109755 3880:Medicago truncatula
           (barrel medic)
          Length = 117

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 71  tgattgagccgtgccaatatcacacta 97
           ||||||||||||||||||||| |||||
Sbjct: 85  tgattgagccgtgccaatatctcacta 111




>RF00643;MIR171_1;AC134967.20/116067-116170 3880:Medicago
          truncatula (barrel medic)
          Length = 104

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 71 tgattgagccgtgccaatatcac 93
          |||||||||||||||||||||||
Sbjct: 72 tgattgagccgtgccaatatcac 94




>RF00643;MIR171_1;BABK01058807.1/722-623 34305:Lotus japonicus
          Length = 100

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 71 tgattgagccgtgccaatatcac 93
          |||||||||||||||||||||||
Sbjct: 68 tgattgagccgtgccaatatcac 90




>RF00643;MIR171_1;AM449096.1/12478-12578 29760:Vitis vinifera
          Length = 101

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 71 tgattgagccgtgccaatatcac 93
          |||||||||||||||||||||||
Sbjct: 69 tgattgagccgtgccaatatcac 91




>RF00643;MIR171_1;AM446221.1/52246-52149 29760:Vitis vinifera
          Length = 98

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 71 tgattgagccgtgccaatatcac 93
          |||||||||||||||||||||||
Sbjct: 66 tgattgagccgtgccaatatcac 88




>RF00643;MIR171_1;EU940714.1/212-315 4577:Zea mays
          Length = 104

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 69 tctgattgagccgtgccaatatc 91
          |||||||||||||||||||||||
Sbjct: 70 tctgattgagccgtgccaatatc 92




>RF00643;MIR171_1;EU946837.1/362-465 4577:Zea mays
          Length = 104

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 69 tctgattgagccgtgccaatatc 91
          |||||||||||||||||||||||
Sbjct: 70 tctgattgagccgtgccaatatc 92




>RF00643;MIR171_1;ABXC01000488.1/1154-1044 4558:Sorghum bicolor
          (sorghum)
          Length = 111

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 69 tctgattgagccgtgccaatatc 91
          |||||||||||||||||||||||
Sbjct: 77 tctgattgagccgtgccaatatc 99




>RF00643;MIR171_1;ABXC01000737.1/81777-81641 4558:Sorghum bicolor
           (sorghum)
          Length = 137

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 69  tctgattgagccgtgccaatatc 91
           |||||||||||||||||||||||
Sbjct: 103 tctgattgagccgtgccaatatc 125




>RF00643;MIR171_1;ABXC01004438.1/173968-173868 4558:Sorghum
          bicolor (sorghum)
          Length = 101

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 71 tgattgagccgtgccaatatcac 93
          |||||||||||||||||||||||
Sbjct: 69 tgattgagccgtgccaatatcac 91




>RF00643;MIR171_1;AY551250.1/5-106 4530:Oryza sativa (rice)
          Length = 102

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 71 tgattgagccgtgccaatatcac 93
          |||||||||||||||||||||||
Sbjct: 70 tgattgagccgtgccaatatcac 92




>RF00643;MIR171_1;AAAA02030424.1/14947-15083 39946:Oryza sativa
           Indica Group
          Length = 137

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 69  tctgattgagccgtgccaatatc 91
           |||||||||||||||||||||||
Sbjct: 103 tctgattgagccgtgccaatatc 125




>RF00643;MIR171_1;AC215662.2/9608-9473 4537:Oryza punctata
          Length = 136

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 69  tctgattgagccgtgccaatatc 91
           |||||||||||||||||||||||
Sbjct: 102 tctgattgagccgtgccaatatc 124




>RF00643;MIR171_1;AAAA02007796.1/27966-27846 39946:Oryza sativa
           Indica Group
          Length = 121

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 69  tctgattgagccgtgccaatatc 91
           |||||||||||||||||||||||
Sbjct: 87  tctgattgagccgtgccaatatc 109




>RF00643;MIR171_1;AP008209.1/1950936-1951056 39947:Oryza sativa
           Japonica Group
          Length = 121

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 69  tctgattgagccgtgccaatatc 91
           |||||||||||||||||||||||
Sbjct: 87  tctgattgagccgtgccaatatc 109




>RF00643;MIR171_1;AL606645.2/80760-80660 39947:Oryza sativa
          Japonica Group
          Length = 101

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 71 tgattgagccgtgccaatatcac 93
          |||||||||||||||||||||||
Sbjct: 69 tgattgagccgtgccaatatcac 91




>RF00643;MIR171_1;FM163807.1/196-297 3702:Arabidopsis thaliana
          (thale cress)
          Length = 102

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 72 gattgagccgtgccaatatcac 93
          ||||||||||||||||||||||
Sbjct: 71 gattgagccgtgccaatatcac 92




>RF00643;MIR171_1;BABK01005968.1/2486-2599 34305:Lotus japonicus
          Length = 114

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 71  tgattgagccgtgccaatatcacact 96
           ||||||||||||||||||||| ||||
Sbjct: 82  tgattgagccgtgccaatatctcact 107




>RF00643;MIR171_1;BABK01108397.1/266-409 34305:Lotus japonicus
          Length = 144

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 71  tgattgagccgtgccaatatcacact 96
           ||||||||||||||||||||| ||||
Sbjct: 112 tgattgagccgtgccaatatctcact 137




>RF00643;MIR171_1;AP010316.1/5761-5862 34305:Lotus japonicus
          Length = 102

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 68 atctgattgagccgtgccaatatcac 93
          |||||||||||||| |||||||||||
Sbjct: 67 atctgattgagccgcgccaatatcac 92