miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00692;MIR171_2;AARH01006308.1/48604-48716 3694:Populus
trichocarpa
Length = 113
Score = 222 bits (112), Expect = 7e-58
Identities = 112/112 (100%)
Strand = Plus / Plus
Query: 1 ggagaagtagacacggtgtgatattggtccggctcatcttctgtgcataagcatctgaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 ggagaagtagacacggtgtgatattggtccggctcatcttctgtgcataagcatctgaag 61
Query: 61 ttcttcactcatgaagacgagccgaatcaatatcactcttgtatgcttcttc 112
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 ttcttcactcatgaagacgagccgaatcaatatcactcttgtatgcttcttc 113
>RF00692;MIR171_2;AARH01005111.1/21886-21779 3694:Populus
trichocarpa
Length = 108
Score = 71.9 bits (36), Expect = 2e-12
Identities = 92/109 (84%), Gaps = 5/109 (4%)
Strand = Plus / Plus
Query: 1 ggagaagtagacacggtgtgatattggtccggctcatcttctgtgcataagcatctgaag 60
||||||| ||||| || ||| ||||| |||||||| |||||||| || ||||| ||||
Sbjct: 2 ggagaagcagacatggcgtggtattgatccggctcttcttctgt--atttgcatcagaag 59
Query: 61 ttcttcactcatgaagacgagccgaatcaatatcactcttgtatgcttc 109
|| ||| || ||||||||||||||||||||||||||||||| |||||
Sbjct: 60 tttttcgct---gaagacgagccgaatcaatatcactcttgtacgcttc 105
>RF00692;MIR171_2;AASG02011537.1/4995-5113 3988:Ricinus communis
(castor bean)
Length = 119
Score = 67.9 bits (34), Expect = 3e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 78 cgagccgaatcaatatcactcttgtatgcttctt 111
||||||||||||||||||||||||||||||||||
Sbjct: 85 cgagccgaatcaatatcactcttgtatgcttctt 118
Score = 52.0 bits (26), Expect = 2e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 2 gagaagtagacacggtgtgatattggtccggctcatct 39
|||||||||||| || |||||||||||||| |||||||
Sbjct: 3 gagaagtagacatggcgtgatattggtccgactcatct 40
>RF00692;MIR171_2;CAAP02000606.1/45780-45883 29760:Vitis vinifera
Length = 104
Score = 67.9 bits (34), Expect = 3e-11
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 74 aagacgagccgaatcaatatcactcttgtatgcttctt 111
||||||||||||| ||||||||||||||||||||||||
Sbjct: 66 aagacgagccgaaccaatatcactcttgtatgcttctt 103
Score = 60.0 bits (30), Expect = 6e-09
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 1 ggagaagtagacacggtgtgatattggtccggctcatcttct 42
||||||||||||| |||||| ||||||| |||||||||||||
Sbjct: 2 ggagaagtagacatggtgtggtattggttcggctcatcttct 43
>RF00692;MIR171_2;CU571241.2/65429-65545 3880:Medicago truncatula
(barrel medic)
Length = 117
Score = 61.9 bits (31), Expect = 2e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 75 agacgagccgaatcaatatcactcttgtatgcttc 109
|||||||||||||||||||||||||||| ||||||
Sbjct: 80 agacgagccgaatcaatatcactcttgtttgcttc 114
>RF00692;MIR171_2;ABIM01001505.1/16686-16573 3649:Carica papaya
(papaya)
Length = 114
Score = 58.0 bits (29), Expect = 3e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 75 agacgagccgaatcaatatcactcttgtatgcttctt 111
|||||||||||||||||||||||| |||||| |||||
Sbjct: 77 agacgagccgaatcaatatcactcctgtatgtttctt 113
>RF00692;MIR171_2;EF424185.1/156-34 49314:Annona cherimola
Length = 123
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 78 cgagccgaatcaatatcactcttgtat 104
|||||||||||||||||||||||||||
Sbjct: 89 cgagccgaatcaatatcactcttgtat 115
>RF00692;MIR171_2;CU571241.2/65608-65725 3880:Medicago truncatula
(barrel medic)
Length = 118
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 74 aagacgagccgaatcaatatcactc 98
|||||||||||||||||||||||||
Sbjct: 80 aagacgagccgaatcaatatcactc 104
>RF00692;MIR171_2;BABK01003433.1/149-44 34305:Lotus japonicus
Length = 106
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 79 gagccgaatcaatatcactcttgt 102
||||||||||||||||||||||||
Sbjct: 73 gagccgaatcaatatcactcttgt 96
