miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00692;MIR171_2;AARH01005111.1/21886-21779 3694:Populus
trichocarpa
Length = 108
Score = 184 bits (93), Expect = 1e-46
Identities = 99/101 (98%)
Strand = Plus / Plus
Query: 1 gaagcagacatggcgtggtattgatccggctcatcttctgtatttgcatcagaagttctt 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct: 5 gaagcagacatggcgtggtattgatccggctcttcttctgtatttgcatcagaagttttt 64
Query: 61 cgctgaagacgagccgaatcaatatcactcttgtacgcttc 101
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgctgaagacgagccgaatcaatatcactcttgtacgcttc 105
>RF00692;MIR171_2;AARH01006308.1/48604-48716 3694:Populus
trichocarpa
Length = 113
Score = 81.8 bits (41), Expect = 2e-15
Identities = 91/106 (85%), Gaps = 5/106 (4%)
Strand = Plus / Plus
Query: 1 gaagcagacatggcgtggtattgatccggctcatcttctgt--atttgcatcagaagttc 58
|||| ||||| || ||| ||||| ||||||||||||||||| || ||||| |||||||
Sbjct: 5 gaagtagacacggtgtgatattggtccggctcatcttctgtgcataagcatctgaagttc 64
Query: 59 ttcgct---gaagacgagccgaatcaatatcactcttgtacgcttc 101
||| || ||||||||||||||||||||||||||||||| |||||
Sbjct: 65 ttcactcatgaagacgagccgaatcaatatcactcttgtatgcttc 110
>RF00692;MIR171_2;ABIM01001505.1/16686-16573 3649:Carica papaya
(papaya)
Length = 114
Score = 56.0 bits (28), Expect = 9e-08
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 1 gaagcagacatggcgtggtattgatccggctcatct 36
|||||||||| | |||||||||||||||||||||||
Sbjct: 5 gaagcagacaggacgtggtattgatccggctcatct 40
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 67 agacgagccgaatcaatatcactcttgta 95
|||||||||||||||||||||||| ||||
Sbjct: 77 agacgagccgaatcaatatcactcctgta 105
>RF00692;MIR171_2;AASG02011537.1/4995-5113 3988:Ricinus communis
(castor bean)
Length = 119
Score = 56.0 bits (28), Expect = 9e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 70 cgagccgaatcaatatcactcttgtacgcttc 101
|||||||||||||||||||||||||| |||||
Sbjct: 85 cgagccgaatcaatatcactcttgtatgcttc 116
>RF00692;MIR171_2;CU571241.2/65429-65545 3880:Medicago truncatula
(barrel medic)
Length = 117
Score = 56.0 bits (28), Expect = 9e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 67 agacgagccgaatcaatatcactcttgt 94
||||||||||||||||||||||||||||
Sbjct: 80 agacgagccgaatcaatatcactcttgt 107
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 8 acatggcgtggtattgatccggctcatct 36
|||||||||| ||||||||||||||||||
Sbjct: 12 acatggcgtgatattgatccggctcatct 40
>RF00692;MIR171_2;CAAP02000606.1/45780-45883 29760:Vitis vinifera
Length = 104
Score = 56.0 bits (28), Expect = 9e-08
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 66 aagacgagccgaatcaatatcactcttgtacgcttc 101
||||||||||||| |||||||||||||||| |||||
Sbjct: 66 aagacgagccgaaccaatatcactcttgtatgcttc 101
Score = 46.1 bits (23), Expect = 9e-05
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 1 gaagcagacatggcgtggtattgatccggctcatcttct 39
|||| |||||||| ||||||||| | |||||||||||||
Sbjct: 5 gaagtagacatggtgtggtattggttcggctcatcttct 43
>RF00692;MIR171_2;EF424185.1/156-34 49314:Annona cherimola
Length = 123
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 70 cgagccgaatcaatatcactcttgta 95
||||||||||||||||||||||||||
Sbjct: 89 cgagccgaatcaatatcactcttgta 114
>RF00692;MIR171_2;CU571241.2/65608-65725 3880:Medicago truncatula
(barrel medic)
Length = 118
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 66 aagacgagccgaatcaatatcactc 90
|||||||||||||||||||||||||
Sbjct: 80 aagacgagccgaatcaatatcactc 104
>RF00692;MIR171_2;BABK01003433.1/149-44 34305:Lotus japonicus
Length = 106
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 71 gagccgaatcaatatcactcttgt 94
||||||||||||||||||||||||
Sbjct: 73 gagccgaatcaatatcactcttgt 96
