miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00452;mir-172;AARH01003539.1/168033-168162 3694:Populus
trichocarpa
Length = 130
Score = 256 bits (129), Expect = 6e-68
Identities = 129/129 (100%)
Strand = Plus / Plus
Query: 1 ttgtttgcaggtgcagcatcatcaagattcacattcaaatagatgtaccgaagctataca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttgtttgcaggtgcagcatcatcaagattcacattcaaatagatgtaccgaagctataca 60
Query: 61 gctatgtagctagctagcaatgtataatcattgtaggtgagaatcttgatgatgctgcat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gctatgtagctagctagcaatgtataatcattgtaggtgagaatcttgatgatgctgcat 120
Query: 121 cagccataa 129
|||||||||
Sbjct: 121 cagccataa 129
>RF00452;mir-172;AARH01004415.1/120029-119901 3694:Populus
trichocarpa
Length = 129
Score = 129 bits (65), Expect = 1e-29
Identities = 114/129 (88%), Gaps = 1/129 (0%)
Strand = Plus / Plus
Query: 1 ttgtttgcaggtgcagcatcatcaagattcacattcaaatagatgtaccgaagctataca 60
||||||||||||||||||||||||||||||||||||||| |||||||| | ||||| |
Sbjct: 1 ttgtttgcaggtgcagcatcatcaagattcacattcaaacagatgtacggcagctagcta 60
Query: 61 gctatgtagctagctagcaatgtataatcattgtaggtgagaatcttgatgatgctgcat 120
|||| ||| ||| |||||||||| || ||| ||||||||||||||||||||||||||
Sbjct: 61 gctagatagatagacagcaatgtat-ttctttgaaggtgagaatcttgatgatgctgcat 119
Query: 121 cagccataa 129
|||||||||
Sbjct: 120 cagccataa 128
>RF00452;mir-172;AASG02049897.1/697-856 3988:Ricinus communis
(castor bean)
Length = 160
Score = 67.9 bits (34), Expect = 3e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 95 aggtgagaatcttgatgatgctgcatcagccata 128
||||||||||||||||||||||||||||||||||
Sbjct: 125 aggtgagaatcttgatgatgctgcatcagccata 158
Score = 61.9 bits (31), Expect = 2e-09
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 1 ttgtttgcaggtgcagcatcatcaagattcacattcaaa 39
||||||||||||||||||||| |||||||||||| ||||
Sbjct: 1 ttgtttgcaggtgcagcatcaccaagattcacatgcaaa 39
>RF00452;mir-172;AM457961.2/1662-1782 29760:Vitis vinifera
Length = 121
Score = 61.9 bits (31), Expect = 2e-09
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 1 ttgtttgcaggtgcagcatcatcaagattcacattcaaa 39
||||||||||||| |||||||||||||||||||| ||||
Sbjct: 1 ttgtttgcaggtgtagcatcatcaagattcacatgcaaa 39
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 98 tgagaatcttgatgatgctgcatc 121
||||||||||||||||||||||||
Sbjct: 89 tgagaatcttgatgatgctgcatc 112
>RF00452;mir-172;CAAP02000586.1/29172-29291 29760:Vitis vinifera
Length = 120
Score = 60.0 bits (30), Expect = 8e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 1 ttgtttgcaggtgcagcatcatcaagattcacat 34
||||||||||||| ||||||||||||||||||||
Sbjct: 1 ttgtttgcaggtgtagcatcatcaagattcacat 34
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 98 tgagaatcttgatgatgctgcatc 121
||||||||||||||||||||||||
Sbjct: 88 tgagaatcttgatgatgctgcatc 111
>RF00452;mir-172;ABXC01006306.1/12162-12041 4558:Sorghum bicolor
(sorghum)
Length = 122
Score = 60.0 bits (30), Expect = 8e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 5 ttgcaggtgcagcatcatcaagattcacat 34
||||||||||||||||||||||||||||||
Sbjct: 5 ttgcaggtgcagcatcatcaagattcacat 34
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 98 tgagaatcttgatgatgctgcatcagc 124
|||||||||||||||||||||||||||
Sbjct: 90 tgagaatcttgatgatgctgcatcagc 116
>RF00452;mir-172;AASG02011039.1/5310-5468 3988:Ricinus communis
(castor bean)
Length = 159
Score = 58.0 bits (29), Expect = 3e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 97 gtgagaatcttgatgatgctgcatcagccataa 129
|||||||||||||||||||||||||||| ||||
Sbjct: 126 gtgagaatcttgatgatgctgcatcagcaataa 158
Score = 56.0 bits (28), Expect = 1e-07
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 1 ttgtttgcaggtgcagcatcatcaagattcacattcaaat 40
|||||||| |||| |||||||||||||||||||| |||||
Sbjct: 1 ttgtttgcgggtgtagcatcatcaagattcacatgcaaat 40
>RF00452;mir-172;ABIM01012229.1/3274-3102 3649:Carica papaya
(papaya)
Length = 173
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 98 tgagaatcttgatgatgctgcatcagccataa 129
|||||||||||||||||||||||| |||||||
Sbjct: 141 tgagaatcttgatgatgctgcatcggccataa 172
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 1 ttgtttgcaggtgcagcatcatcaagattcacat 34
|||||||| |||||||||||||| ||||||||||
Sbjct: 1 ttgtttgctggtgcagcatcatcgagattcacat 34
>RF00452;mir-172;AARH01003915.1/155600-155740 3694:Populus
trichocarpa
Length = 141
Score = 56.0 bits (28), Expect = 1e-07
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 1 ttgtttgcaggtgcagcatcatcaagattcacattcaaat 40
|||||||| |||| |||||||||||||||||||| |||||
Sbjct: 1 ttgtttgcgggtggagcatcatcaagattcacatgcaaat 40
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 97 gtgagaatcttgatgatgctgcatc 121
|||||||||||||||||||||||||
Sbjct: 108 gtgagaatcttgatgatgctgcatc 132
>RF00452;mir-172;BABK01107385.1/174-85 34305:Lotus japonicus
Length = 90
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 98 tgagaatcttgatgatgctgcatcagccataa 129
||||||||||||||||||||||||||| ||||
Sbjct: 58 tgagaatcttgatgatgctgcatcagcaataa 89
Score = 50.1 bits (25), Expect = 7e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 1 ttgtttgcaggtgcagcatcatcaagattcaca 33
|||| ||||||||||||| ||||||||||||||
Sbjct: 1 ttgtctgcaggtgcagcaccatcaagattcaca 33
>RF00452;mir-172;AASG02019478.1/457-599 3988:Ricinus communis
(castor bean)
Length = 143
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 98 tgagaatcttgatgatgctgcatcagc 124
|||||||||||||||||||||||||||
Sbjct: 111 tgagaatcttgatgatgctgcatcagc 137
>RF00452;mir-172;BABK01039752.1/451-284 34305:Lotus japonicus
Length = 168
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 98 tgagaatcttgatgatgctgcatcagc 124
|||||||||||||||||||||||||||
Sbjct: 136 tgagaatcttgatgatgctgcatcagc 162
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 6 tgcaggtgcagcatcatcaagattcaca 33
||||||||||||||||| ||||||||||
Sbjct: 6 tgcaggtgcagcatcattaagattcaca 33
>RF00452;mir-172;EU945504.1/992-1139 4577:Zea mays
Length = 148
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 98 tgagaatcttgatgatgctgcatcagc 124
|||||||||||||||||||||||||||
Sbjct: 116 tgagaatcttgatgatgctgcatcagc 142
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 5 ttgcaggtgcagcatcatcaagattcacat 34
|||||||||||||| |||||||||||||||
Sbjct: 5 ttgcaggtgcagcaccatcaagattcacat 34
>RF00452;mir-172;ABXC01002997.1/14893-14755 4558:Sorghum bicolor
(sorghum)
Length = 139
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 98 tgagaatcttgatgatgctgcatcagc 124
|||||||||||||||||||||||||||
Sbjct: 107 tgagaatcttgatgatgctgcatcagc 133
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 5 ttgcaggtgcagcatcatcaagattcacat 34
|||||||||||||| |||||||||||||||
Sbjct: 5 ttgcaggtgcagcaccatcaagattcacat 34
>RF00452;mir-172;EU869069.1/352-463 39946:Oryza sativa Indica Group
Length = 112
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 98 tgagaatcttgatgatgctgcatcagc 124
|||||||||||||||||||||||||||
Sbjct: 80 tgagaatcttgatgatgctgcatcagc 106
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 7 gcaggtgcagcatcatcaagattcacat 34
|||||||||||| |||||||||||||||
Sbjct: 7 gcaggtgcagcaccatcaagattcacat 34
>RF00452;mir-172;ABIM01046937.1/220-46 3649:Carica papaya (papaya)
Length = 175
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 1 ttgtttgcaggtgcagcatcatcaagattcacat 34
|||||||| |||||||||||||| ||||||||||
Sbjct: 1 ttgtttgctggtgcagcatcatcgagattcacat 34
>RF00452;mir-172;ABIM01030483.1/4658-4870 3649:Carica papaya
(papaya)
Length = 213
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 97 gtgagaatcttgatgatgctgcatc 121
|||||||||||||||||||||||||
Sbjct: 180 gtgagaatcttgatgatgctgcatc 204
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 10 ggtgcagcatcatcaagattcacattcaaat 40
|||| |||||||||||||||||||| |||||
Sbjct: 10 ggtgtagcatcatcaagattcacatgcaaat 40
>RF00452;mir-172;AC189388.2/19492-19378 51351:Brassica rapa subsp.
pekinensis
Length = 115
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 98 tgagaatcttgatgatgctgcatca 122
|||||||||||||||||||||||||
Sbjct: 83 tgagaatcttgatgatgctgcatca 107
>RF00452;mir-172;FM163882.1/53-161 3702:Arabidopsis thaliana (thale
cress)
Length = 109
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 98 tgagaatcttgatgatgctgcatca 122
|||||||||||||||||||||||||
Sbjct: 77 tgagaatcttgatgatgctgcatca 101
>RF00452;mir-172;AC182714.2/88903-88742 3694:Populus trichocarpa
Length = 162
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 97 gtgagaatcttgatgatgctgcatc 121
|||||||||||||||||||||||||
Sbjct: 129 gtgagaatcttgatgatgctgcatc 153
Score = 48.1 bits (24), Expect = 3e-05
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 1 ttgtttgcaggtgcagcatcatcaagattcacattcaaat 40
|||||||| ||||| |||||| |||||||||||| |||||
Sbjct: 1 ttgtttgcgggtgctgcatcaccaagattcacatgcaaat 40
>RF00452;mir-172;BABK01012763.1/1927-2053 34305:Lotus japonicus
Length = 127
Score = 50.1 bits (25), Expect = 7e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 1 ttgtttgcaggtgcagcatcatcaagattcaca 33
|||||||| |||| |||||||||||||||||||
Sbjct: 1 ttgtttgctggtggagcatcatcaagattcaca 33
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 98 tgagaatcttgatgatgctgca 119
||||||||||||||||||||||
Sbjct: 100 tgagaatcttgatgatgctgca 121
>RF00452;mir-172;BABK01027900.1/1116-1276 34305:Lotus japonicus
Length = 161
Score = 50.1 bits (25), Expect = 7e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 97 gtgagaatcttgatgatgctgcatcagccataa 129
|||||||||||||||||||||||| |||||||
Sbjct: 128 gtgagaatcttgatgatgctgcattggccataa 160
>RF00452;mir-172;CAAP02002084.1/47016-46906 29760:Vitis vinifera
Length = 111
Score = 50.1 bits (25), Expect = 7e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 96 ggtgagaatcttgatgatgctgcatcagc 124
|||| ||||||||||||||||||||||||
Sbjct: 35 ggtgtgaatcttgatgatgctgcatcagc 7
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 98 tgagaatcttgatgatgctgcat 120
|||||||||||||||||||||||
Sbjct: 79 tgagaatcttgatgatgctgcat 101
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 tgcagcatcatcaagattcaca 33
||||||||||||||||||||||
Sbjct: 12 tgcagcatcatcaagattcaca 33
>RF00452;mir-172;ABXC01000976.1/316269-316174 4558:Sorghum bicolor
(sorghum)
Length = 96
Score = 50.1 bits (25), Expect = 7e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 5 ttgcaggtgcagcatcatcaagattcaca 33
|||| ||||||||||||||||||||||||
Sbjct: 92 ttgctggtgcagcatcatcaagattcaca 64
>RF00452;mir-172;ABXC01001026.1/165015-165125 4558:Sorghum bicolor
(sorghum)
Length = 111
Score = 50.1 bits (25), Expect = 7e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 98 tgagaatcttgatgatgctgcatcagcca 126
|||||||||||||||||||||||| ||||
Sbjct: 79 tgagaatcttgatgatgctgcatccgcca 107
>RF00452;mir-172;EU869090.1/178-288 39946:Oryza sativa Indica Group
Length = 111
Score = 50.1 bits (25), Expect = 7e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 4 tttgcaggtgcagcatcatcaagattcac 32
||||| |||||||||||||||||||||||
Sbjct: 108 tttgctggtgcagcatcatcaagattcac 80
>RF00452;mir-172;AC189648.2/24074-23978 51351:Brassica rapa subsp.
pekinensis
Length = 97
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 101 gaatcttgatgatgctgcatcagc 124
||||||||||||||||||||||||
Sbjct: 68 gaatcttgatgatgctgcatcagc 91
>RF00452;mir-172;FM163855.1/191-306 3702:Arabidopsis thaliana (thale
cress)
Length = 116
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 98 tgagaatcttgatgatgctgcatc 121
||||||||||||||||||||||||
Sbjct: 84 tgagaatcttgatgatgctgcatc 107
>RF00452;mir-172;EU549250.1/242-366 3702:Arabidopsis thaliana (thale
cress)
Length = 125
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 101 gaatcttgatgatgctgcatcagc 124
||||||||||||||||||||||||
Sbjct: 96 gaatcttgatgatgctgcatcagc 119
>RF00452;mir-172;CAAP02003282.1/14594-14705 29760:Vitis vinifera
Length = 112
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 98 tgagaatcttgatgatgctgcatc 121
||||||||||||||||||||||||
Sbjct: 80 tgagaatcttgatgatgctgcatc 103
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 15 agcatcatcaagattcacattcaaat 40
|||||||||||||||||||| |||||
Sbjct: 15 agcatcatcaagattcacatgcaaat 40
>RF00452;mir-172;CAAP02002749.1/38930-38796 29760:Vitis vinifera
Length = 135
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 101 gaatcttgatgatgctgcatcagc 124
||||||||||||||||||||||||
Sbjct: 106 gaatcttgatgatgctgcatcagc 129
>RF00452;mir-172;AP006162.2/95640-95748 39947:Oryza sativa Japonica
Group
Length = 109
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 98 tgagaatcttgatgatgctgcatc 121
||||||||||||||||||||||||
Sbjct: 77 tgagaatcttgatgatgctgcatc 100
>RF00452;mir-172;EU549232.1/232-344 3702:Arabidopsis thaliana (thale
cress)
Length = 113
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 98 tgagaatcttgatgatgctgca 119
||||||||||||||||||||||
Sbjct: 81 tgagaatcttgatgatgctgca 102
>RF00452;mir-172;EU549227.1/243-121 3702:Arabidopsis thaliana (thale
cress)
Length = 123
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 98 tgagaatcttgatgatgctgca 119
||||||||||||||||||||||
Sbjct: 91 tgagaatcttgatgatgctgca 112
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 5 ttgcaggtgcagcatcatcaagattc 30
|||||| |||||||||||||||||||
Sbjct: 119 ttgcagctgcagcatcatcaagattc 94
