miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00247;mir-160;AARH01003540.1/65975-65890 3694:Populus trichocarpa
Length = 86
Score = 123 bits (62), Expect = 7e-28
Identities = 80/86 (93%)
Strand = Plus / Plus
Query: 28 atgtgcctggctccctgtatgccatttgcagagtcaatcgaaacatcgatggcctccgtg 87
||||||||||||||||||||||||||||||||| | | || | | |||||||||||||||
Sbjct: 1 atgtgcctggctccctgtatgccatttgcagagcccaacggatcctcgatggcctccgtg 60
Query: 88 gatggcgtatgaggagccatgcatat 113
||||||||||||||||||||||||||
Sbjct: 61 gatggcgtatgaggagccatgcatat 86
>RF00247;mir-160;CAAP02000343.1/40092-40007 29760:Vitis vinifera
Length = 86
Score = 117 bits (59), Expect = 4e-26
Identities = 77/83 (92%)
Strand = Plus / Plus
Query: 31 tgcctggctccctgtatgccatttgcagagtcaatcgaaacatcgatggcctccgtggat 90
|||||||||||||||||||||||||||||| | | || ||||||||||||| |||||||
Sbjct: 4 tgcctggctccctgtatgccatttgcagagcccaccggcacatcgatggccttcgtggat 63
Query: 91 ggcgtatgaggagccatgcatat 113
|||||||||||||||||||||||
Sbjct: 64 ggcgtatgaggagccatgcatat 86
>RF00247;mir-160;ABIM01012188.1/1387-1471 3649:Carica papaya
(papaya)
Length = 85
Score = 111 bits (56), Expect = 3e-24
Identities = 78/84 (92%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 29 tgtgcctggctccctgtatgccatttgcagagtcaatcgaaacatcgatggcctccgtgg 88
|||||||||||||||||||||||||||||||| | | ||| ||||| ||||||||||||
Sbjct: 2 tgtgcctggctccctgtatgccatttgcagagcccaccgag-catcgctggcctccgtgg 60
Query: 89 atggcgtatgaggagccatgcata 112
||||||||||||||||||||||||
Sbjct: 61 atggcgtatgaggagccatgcata 84
>RF00247;mir-160;EU548617.1/275-359 3702:Arabidopsis thaliana (thale
cress)
Length = 85
Score = 93.7 bits (47), Expect = 6e-19
Identities = 75/83 (90%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 31 tgcctggctccctgtatgccatttgcagagtcaatcgaaacatcgatggcctccgtggat 90
|||||||||||||||||||||| ||| ||| | ||||| ||||||| |||||||||||
Sbjct: 4 tgcctggctccctgtatgccatatgctgagcccatcgagt-atcgatgacctccgtggat 62
Query: 91 ggcgtatgaggagccatgcatat 113
|||||||||||||||||||||||
Sbjct: 63 ggcgtatgaggagccatgcatat 85
>RF00247;mir-160;BABK01026793.1/1193-1108 34305:Lotus japonicus
Length = 86
Score = 91.7 bits (46), Expect = 2e-18
Identities = 76/86 (88%)
Strand = Plus / Plus
Query: 28 atgtgcctggctccctgtatgccatttgcagagtcaatcgaaacatcgatggcctccgtg 87
|||||||||||||||||||||||||||| |||| ||||||||||| ||| ||| ||
Sbjct: 1 atgtgcctggctccctgtatgccatttggagagctcatcgaaacatcaatgatctctttg 60
Query: 88 gatggcgtatgaggagccatgcatat 113
||||||||||||||||||| ||||||
Sbjct: 61 gatggcgtatgaggagccaagcatat 86
>RF00247;mir-160;AC148995.2/105120-105205 3880:Medicago truncatula
(barrel medic)
Length = 86
Score = 60.0 bits (30), Expect = 8e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 29 tgtgcctggctccctgtatgccatttgcagagtc 62
||||||||||||||||||||||||||| ||||||
Sbjct: 2 tgtgcctggctccctgtatgccatttgtagagtc 35
>RF00247;mir-160;CAAP02000723.1/67959-67874 29760:Vitis vinifera
Length = 86
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 31 tgcctggctccctgtatgccatttgcagagtc 62
||||||||||||||||||||||||||| ||||
Sbjct: 4 tgcctggctccctgtatgccatttgcaaagtc 35
>RF00247;mir-160;AASG02001090.1/34048-34133 3988:Ricinus communis
(castor bean)
Length = 86
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 29 tgtgcctggctccctgtatgccatttg 55
|||||||||||||||||||||||||||
Sbjct: 2 tgtgcctggctccctgtatgccatttg 28
>RF00247;mir-160;AC196190.2/61996-61908 4081:Solanum lycopersicum
Length = 89
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 31 tgcctggctccctgtatgccatttgca 57
|||||||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccatttgca 30
>RF00247;mir-160;AC126015.41/7942-7857 3880:Medicago truncatula
(barrel medic)
Length = 86
Score = 52.0 bits (26), Expect = 2e-06
Identities = 71/86 (82%)
Strand = Plus / Plus
Query: 28 atgtgcctggctccctgtatgccatttgcagagtcaatcgaaacatcgatggcctccgtg 87
||||||||||||||||||||||||| | || || |||| ||| ||| ||| |||
Sbjct: 1 atgtgcctggctccctgtatgccatatatgaagctcattgaaaaatcaatgacctttgtg 60
Query: 88 gatggcgtatgaggagccatgcatat 113
||||||||||||||||||| ||||||
Sbjct: 61 gatggcgtatgaggagccaagcatat 86
>RF00247;mir-160;AY728427.1/2-87 3694:Populus trichocarpa
Length = 86
Score = 50.1 bits (25), Expect = 8e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 29 tgtgcctggctccctgtatgccatttgca 57
|||||||||||||||| ||||||||||||
Sbjct: 2 tgtgcctggctccctgcatgccatttgca 30
>RF00247;mir-160;ABXC01004530.1/55208-55296 4558:Sorghum bicolor
(sorghum)
Length = 89
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 28 atgtgcctggctccctgtatgcca 51
||||||||||||||||||||||||
Sbjct: 1 atgtgcctggctccctgtatgcca 24
>RF00247;mir-160;EU798771.1/193-98 58934:Zizania latifolia
Length = 96
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 28 atgtgcctggctccctgtatgcca 51
||||||||||||||||||||||||
Sbjct: 1 atgtgcctggctccctgtatgcca 24
>RF00247;mir-160;AAAA02022910.1/14752-14660 39946:Oryza sativa
Indica Group
Length = 93
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 28 atgtgcctggctccctgtatgcca 51
||||||||||||||||||||||||
Sbjct: 1 atgtgcctggctccctgtatgcca 24
>RF00247;mir-160;ABIM01017407.1/6156-6071 3649:Carica papaya
(papaya)
Length = 86
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 31 tgcctggctccctgtatgccatttgca 57
|||||||||||||||||||||| ||||
Sbjct: 4 tgcctggctccctgtatgccatctgca 30
>RF00247;mir-160;CAAP02006197.1/486-575 29760:Vitis vinifera
Length = 90
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 29 tgtgcctggctccctgtatgcca 51
|||||||||||||||||||||||
Sbjct: 2 tgtgcctggctccctgtatgcca 24
>RF00247;mir-160;FM878703.1/301-387 213592:Musa acuminata subsp.
burmannicoides
Length = 87
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 29 tgtgcctggctccctgtatgcca 51
|||||||||||||||||||||||
Sbjct: 2 tgtgcctggctccctgtatgcca 24
>RF00247;mir-160;EU975926.1/304-390 4577:Zea mays
Length = 87
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 29 tgtgcctggctccctgtatgcca 51
|||||||||||||||||||||||
Sbjct: 2 tgtgcctggctccctgtatgcca 24
>RF00247;mir-160;ABXC01002436.1/220577-220488 4558:Sorghum bicolor
(sorghum)
Length = 90
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 29 tgtgcctggctccctgtatgcca 51
|||||||||||||||||||||||
Sbjct: 2 tgtgcctggctccctgtatgcca 24
>RF00247;mir-160;AAAA02005231.1/55127-55040 39946:Oryza sativa
Indica Group
Length = 88
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 29 tgtgcctggctccctgtatgcca 51
|||||||||||||||||||||||
Sbjct: 2 tgtgcctggctccctgtatgcca 24
>RF00247;mir-160;DQ455766.1/101-12 169985:Oenocarpus bataua
Length = 90
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 29 tgtgcctggctccctgtatgcca 51
|||||||||||||||||||||||
Sbjct: 2 tgtgcctggctccctgtatgcca 24
>RF00247;mir-160;Z97344.2/54320-54406 3702:Arabidopsis thaliana
(thale cress)
Length = 87
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 30 gtgcctggctccctgtatgcca 51
||||||||||||||||||||||
Sbjct: 3 gtgcctggctccctgtatgcca 24
>RF00247;mir-160;EU974767.1/328-419 4577:Zea mays
Length = 92
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 30 gtgcctggctccctgtatgcca 51
||||||||||||||||||||||
Sbjct: 3 gtgcctggctccctgtatgcca 24
>RF00247;mir-160;AAAA02020747.1/14884-14971 39946:Oryza sativa
Indica Group
Length = 88
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 30 gtgcctggctccctgtatgcca 51
||||||||||||||||||||||
Sbjct: 3 gtgcctggctccctgtatgcca 24
>RF00247;mir-160;ABEU01014597.1/43590-43504 145481:Physcomitrella
patens subsp. patens
Length = 87
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 31 tgcctggctccctgtatgccatttgc 56
||||||||||||||||||||| ||||
Sbjct: 4 tgcctggctccctgtatgccacttgc 29
